Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS07990

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
2,151,459	+		ABI39_RS07980	0.62	-0.2
2,151,671	-		ABI39_RS07980	0.88	+2.1
2,151,680	-		ABI39_RS07980	0.89	-0.6
2,151,684	+				+0.1
2,151,687	+				+0.6
2,151,706	+				+2.1
2,151,737	+				+2.0
2,151,763	+				-1.3
2,151,823	+				-1.0
2,151,831	+				-0.2
2,151,832	-				+0.6
2,151,835	+				-0.6
2,151,845	-				+0.1
2,151,881	-		ABI39_RS07985	0.14	+0.0
2,152,114	+		ABI39_RS07985	0.53	-0.0
2,152,159	-		ABI39_RS07985	0.60	+0.9
2,152,199	-		ABI39_RS07985	0.67	+1.2
2,152,199	-		ABI39_RS07985	0.67	+0.2
2,152,244	-		ABI39_RS07985	0.74	-0.5
2,152,425	+				+1.8
2,152,495	+		ABI39_RS07990	0.13	-1.2
2,152,510	+		ABI39_RS07990	0.15	-0.3
2,152,511	-		ABI39_RS07990	0.15	-0.0
2,152,531	+		ABI39_RS07990	0.18	-0.2
2,152,576	+		ABI39_RS07990	0.25	+0.5
2,152,693	+		ABI39_RS07990	0.43	-0.7
2,152,697	+		ABI39_RS07990	0.44	+0.9
2,152,697	+		ABI39_RS07990	0.44	-0.0
2,152,699	+		ABI39_RS07990	0.44	-0.3
2,152,699	+		ABI39_RS07990	0.44	-0.9
2,152,709	-		ABI39_RS07990	0.46	-1.5
2,152,733	-		ABI39_RS07990	0.49	+1.7
2,152,821	+		ABI39_RS07990	0.63	-0.8
2,152,964	-		ABI39_RS07990	0.85	+0.4
2,152,965	+		ABI39_RS07990	0.85	-0.9
2,152,966	-		ABI39_RS07990	0.85	+0.6
2,152,969	+		ABI39_RS07990	0.86	-0.4
2,152,969	+		ABI39_RS07990	0.86	-0.2
2,152,970	-		ABI39_RS07990	0.86	+0.2
2,153,050	+				+0.7
2,153,051	-				-0.4
2,153,159	-				+0.9
2,153,337	-		ABI39_RS07995	0.30	+1.2
2,153,490	-		ABI39_RS07995	0.49	-0.6
2,153,493	+		ABI39_RS07995	0.49	-1.0
2,153,493	+		ABI39_RS07995	0.49	-1.6
2,153,592	+		ABI39_RS07995	0.62	+0.9
2,153,598	+		ABI39_RS07995	0.62	+0.2
2,153,598	+		ABI39_RS07995	0.62	+0.3
2,153,599	-		ABI39_RS07995	0.62	-1.0
2,153,601	+		ABI39_RS07995	0.63	+0.2
2,153,656	-		ABI39_RS07995	0.69	-1.5
2,153,759	+		ABI39_RS07995	0.82	-1.6
2,153,857	-				+0.5
2,153,857	-				-0.6
2,153,873	-				+0.6
2,153,884	-				-0.8
2,153,910	-				-0.2
2,153,911	+				+2.0
2,153,913	+				+0.5
2,153,926	+				+0.3
2,154,000	+				-0.3
2,154,000	+				-1.1