Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06215

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
1,725,308	+				+0.4
1,725,309	-				-0.4
1,725,310	+				+1.1
1,725,314	-				-0.2
1,725,358	-				+1.1
1,725,375	-				-0.6
1,725,384	+				-0.5
1,725,385	-				-1.0
1,725,387	-				-0.5
1,725,410	+		ABI39_RS06210	0.10	+1.1
1,725,411	-		ABI39_RS06210	0.10	+0.2
1,725,416	+		ABI39_RS06210	0.11	-0.8
1,725,416	+		ABI39_RS06210	0.11	-1.0
1,725,423	-		ABI39_RS06210	0.12	-0.6
1,725,524	+		ABI39_RS06210	0.22	-0.7
1,725,525	-		ABI39_RS06210	0.22	-0.0
1,725,536	-		ABI39_RS06210	0.24	-0.1
1,725,572	-		ABI39_RS06210	0.27	-0.4
1,725,597	-		ABI39_RS06210	0.30	-2.1
1,725,597	-		ABI39_RS06210	0.30	-0.3
1,725,611	+		ABI39_RS06210	0.31	+0.0
1,725,639	+		ABI39_RS06210	0.34	-0.2
1,725,639	+		ABI39_RS06210	0.34	+0.1
1,725,645	+		ABI39_RS06210	0.35	-0.4
1,725,648	+		ABI39_RS06210	0.35	+2.3
1,725,649	-		ABI39_RS06210	0.35	-0.1
1,725,649	-		ABI39_RS06210	0.35	+0.3
1,725,679	-		ABI39_RS06210	0.39	+0.1
1,725,728	-		ABI39_RS06210	0.44	-1.3
1,725,732	+		ABI39_RS06210	0.44	-0.8
1,725,783	+		ABI39_RS06210	0.50	+0.5
1,725,799	-		ABI39_RS06210	0.51	-0.4
1,725,799	-		ABI39_RS06210	0.51	+0.1
1,725,809	-		ABI39_RS06210	0.52	-0.8
1,725,820	+		ABI39_RS06210	0.53	+0.3
1,725,820	+		ABI39_RS06210	0.53	-0.8
1,725,843	-		ABI39_RS06210	0.56	-1.0
1,725,935	+		ABI39_RS06210	0.66	-1.3
1,725,950	-		ABI39_RS06210	0.67	-0.3
1,725,968	+		ABI39_RS06210	0.69	-0.6
1,725,969	-		ABI39_RS06210	0.69	-0.4
1,726,037	+		ABI39_RS06210	0.76	+1.4
1,726,038	-		ABI39_RS06210	0.76	-0.3
1,726,073	-		ABI39_RS06210	0.80	-2.5
1,726,076	-		ABI39_RS06210	0.80	+0.1
1,726,161	+		ABI39_RS06210	0.89	+1.9
1,726,162	-		ABI39_RS06210	0.89	-0.8
1,726,176	-				-1.0
1,726,239	+				-2.0
1,726,241	+				-1.4
1,726,253	+				+1.0
1,726,263	+				-1.4
1,726,396	-		ABI39_RS06215	0.14	+0.0
1,726,413	-		ABI39_RS06215	0.16	+0.0
1,726,505	-		ABI39_RS06215	0.26	+0.4
1,726,511	+		ABI39_RS06215	0.27	+0.1
1,726,518	-		ABI39_RS06215	0.28	-0.5
1,726,519	+		ABI39_RS06215	0.28	-1.1
1,726,562	-		ABI39_RS06215	0.33	-0.1
1,726,566	+		ABI39_RS06215	0.33	-1.7
1,726,775	-		ABI39_RS06215	0.56	-0.4
1,726,775	-		ABI39_RS06215	0.56	-0.5
1,726,850	+		ABI39_RS06215	0.64	-1.2
1,726,851	-		ABI39_RS06215	0.64	-1.0
1,726,902	-		ABI39_RS06215	0.70	-0.8
1,726,989	+		ABI39_RS06215	0.80	+0.0
1,727,004	+		ABI39_RS06215	0.81	-0.4
1,727,161	+				-0.6
1,727,307	+				-0.7
1,727,516	+		ABI39_RS06220	0.13	-4.1
1,727,519	-		ABI39_RS06220	0.13	-0.5
1,727,559	+		ABI39_RS06220	0.18	-0.9
1,727,583	+		ABI39_RS06220	0.20	-1.4
1,727,695	-		ABI39_RS06220	0.33	-1.6
1,727,696	+		ABI39_RS06220	0.33	-0.2
1,727,698	+		ABI39_RS06220	0.33	-2.1
1,727,699	-		ABI39_RS06220	0.33	-1.4
1,727,884	+		ABI39_RS06220	0.54	-0.8
1,727,915	-		ABI39_RS06220	0.57	-1.5
1,728,087	+		ABI39_RS06220	0.76	-2.4
1,728,088	-		ABI39_RS06220	0.76	-1.3
1,728,098	-		ABI39_RS06220	0.78	-1.5
1,728,098	-		ABI39_RS06220	0.78	-0.9