Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06180

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
1,715,005	+		ABI39_RS06175	0.62	+0.9
1,715,058	-		ABI39_RS06175	0.65	-0.3
1,715,151	+		ABI39_RS06175	0.69	-0.2
1,715,152	-		ABI39_RS06175	0.69	-1.3
1,715,204	+		ABI39_RS06175	0.72	+1.1
1,715,227	+		ABI39_RS06175	0.73	+1.5
1,715,250	+		ABI39_RS06175	0.74	-1.2
1,715,340	-		ABI39_RS06175	0.79	-0.4
1,715,423	-		ABI39_RS06175	0.83	+0.0
1,715,443	-		ABI39_RS06175	0.84	-0.7
1,715,516	-		ABI39_RS06175	0.87	+1.3
1,715,519	+		ABI39_RS06175	0.87	+1.0
1,715,519	+		ABI39_RS06175	0.87	-1.0
1,715,527	+		ABI39_RS06175	0.88	-0.8
1,715,530	-		ABI39_RS06175	0.88	-1.5
1,715,554	+		ABI39_RS06175	0.89	+0.2
1,715,556	+		ABI39_RS06175	0.89	-0.5
1,715,667	+				+1.9
1,715,731	-				+0.2
1,715,932	-				+2.3
1,715,977	-				-0.9
1,716,125	-		ABI39_RS06180	0.17	-1.8
1,716,143	+		ABI39_RS06180	0.19	+1.3
1,716,313	+		ABI39_RS06180	0.36	-1.8
1,716,404	-		ABI39_RS06180	0.45	-0.7
1,716,447	-		ABI39_RS06180	0.50	-0.4
1,716,458	+		ABI39_RS06180	0.51	-0.3
1,716,567	-		ABI39_RS06180	0.62	-0.2
1,716,623	-		ABI39_RS06180	0.67	-0.5
1,716,639	+		ABI39_RS06180	0.69	-0.7
1,716,673	+		ABI39_RS06180	0.73	-1.2
1,716,674	-		ABI39_RS06180	0.73	+0.2
1,716,674	-		ABI39_RS06180	0.73	-1.3
1,716,849	-				+0.7
1,716,864	+				-1.3
1,716,896	+				-0.2
1,716,902	+				+0.4
1,716,903	-				-0.6
1,716,917	-				+1.3
1,716,989	+				+1.0
1,716,989	+				-1.2
1,717,162	+				+4.0
1,717,163	-				+0.4
1,717,265	+				-0.9
1,717,275	+				-0.6
1,717,303	+				-0.4
1,717,387	-		ABI39_RS06185	0.15	+0.0
1,717,437	+		ABI39_RS06185	0.19	-0.7
1,717,498	+		ABI39_RS06185	0.24	+0.2
1,717,499	-		ABI39_RS06185	0.24	-0.6
1,717,531	+		ABI39_RS06185	0.26	+0.1
1,717,632	-		ABI39_RS06185	0.34	-0.4
1,717,688	-		ABI39_RS06185	0.38	+1.5
1,717,694	+		ABI39_RS06185	0.38	-0.4
1,717,790	-		ABI39_RS06185	0.46	+0.3
1,717,895	+		ABI39_RS06185	0.54	-0.6
1,717,895	+		ABI39_RS06185	0.54	-0.4
1,717,896	-		ABI39_RS06185	0.54	-0.6
1,717,899	+		ABI39_RS06185	0.54	+0.5
1,717,900	-		ABI39_RS06185	0.54	-0.3