Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00925

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABI39_RS00920 and ABI39_RS00925 are separated by 28 nucleotidesABI39_RS00925 and ABI39_RS00930 are separated by 40 nucleotides ABI39_RS00920: ABI39_RS00920 - RagB/SusD family nutrient uptake outer membrane protein, at 290,901 to 292,598 _RS00920 ABI39_RS00925: ABI39_RS00925 - SusC/RagA family TonB-linked outer membrane protein, at 292,627 to 295,476 _RS00925 ABI39_RS00930: ABI39_RS00930 - RagB/SusD family nutrient uptake outer membrane protein, at 295,517 to 297,493 _RS00930 Position (kb) 292 293 294 295 296Strain fitness (log2 ratio) -3 -2 -1 0 1at 291.717 kb on - strand, within ABI39_RS00920at 291.758 kb on + strand, within ABI39_RS00920at 291.759 kb on - strand, within ABI39_RS00920at 291.827 kb on + strand, within ABI39_RS00920at 291.988 kb on + strand, within ABI39_RS00920at 292.104 kb on - strand, within ABI39_RS00920at 292.131 kb on + strand, within ABI39_RS00920at 292.265 kb on - strand, within ABI39_RS00920at 292.292 kb on - strand, within ABI39_RS00920at 292.358 kb on + strand, within ABI39_RS00920at 292.358 kb on + strand, within ABI39_RS00920at 292.370 kb on + strand, within ABI39_RS00920at 292.370 kb on + strand, within ABI39_RS00920at 292.378 kb on + strand, within ABI39_RS00920at 292.418 kb on + strand, within ABI39_RS00920at 292.420 kb on + strand, within ABI39_RS00920at 292.421 kb on - strand, within ABI39_RS00920at 292.443 kb on + strandat 292.446 kb on + strandat 292.453 kb on + strandat 292.497 kb on + strandat 292.497 kb on + strandat 292.497 kb on + strandat 292.498 kb on + strandat 292.498 kb on - strandat 292.502 kb on - strandat 292.541 kb on + strandat 292.563 kb on - strandat 292.734 kb on + strandat 292.745 kb on + strandat 292.947 kb on - strand, within ABI39_RS00925at 292.966 kb on - strand, within ABI39_RS00925at 293.003 kb on - strand, within ABI39_RS00925at 293.005 kb on + strand, within ABI39_RS00925at 293.106 kb on + strand, within ABI39_RS00925at 293.110 kb on - strand, within ABI39_RS00925at 293.116 kb on + strand, within ABI39_RS00925at 293.167 kb on - strand, within ABI39_RS00925at 293.173 kb on + strand, within ABI39_RS00925at 293.174 kb on - strand, within ABI39_RS00925at 293.175 kb on + strand, within ABI39_RS00925at 293.189 kb on - strand, within ABI39_RS00925at 293.264 kb on + strand, within ABI39_RS00925at 293.265 kb on - strand, within ABI39_RS00925at 293.265 kb on - strand, within ABI39_RS00925at 293.296 kb on - strand, within ABI39_RS00925at 293.306 kb on + strand, within ABI39_RS00925at 293.307 kb on - strand, within ABI39_RS00925at 293.310 kb on + strand, within ABI39_RS00925at 293.362 kb on - strand, within ABI39_RS00925at 293.379 kb on + strand, within ABI39_RS00925at 293.435 kb on - strand, within ABI39_RS00925at 293.470 kb on + strand, within ABI39_RS00925at 293.470 kb on + strand, within ABI39_RS00925at 293.562 kb on + strand, within ABI39_RS00925at 293.563 kb on - strand, within ABI39_RS00925at 293.583 kb on + strand, within ABI39_RS00925at 293.758 kb on - strand, within ABI39_RS00925at 293.788 kb on - strand, within ABI39_RS00925at 293.862 kb on + strand, within ABI39_RS00925at 293.863 kb on - strand, within ABI39_RS00925at 293.890 kb on - strand, within ABI39_RS00925at 293.908 kb on + strand, within ABI39_RS00925at 293.908 kb on + strand, within ABI39_RS00925at 293.955 kb on - strand, within ABI39_RS00925at 294.003 kb on + strand, within ABI39_RS00925at 294.055 kb on + strand, within ABI39_RS00925at 294.117 kb on + strand, within ABI39_RS00925at 294.158 kb on + strand, within ABI39_RS00925at 294.159 kb on + strand, within ABI39_RS00925at 294.159 kb on - strand, within ABI39_RS00925at 294.213 kb on - strand, within ABI39_RS00925at 294.251 kb on + strand, within ABI39_RS00925at 294.251 kb on + strand, within ABI39_RS00925at 294.256 kb on - strand, within ABI39_RS00925at 294.298 kb on - strand, within ABI39_RS00925at 294.298 kb on - strand, within ABI39_RS00925at 294.298 kb on - strand, within ABI39_RS00925at 294.304 kb on + strand, within ABI39_RS00925at 294.304 kb on + strand, within ABI39_RS00925at 294.324 kb on + strand, within ABI39_RS00925at 294.339 kb on + strand, within ABI39_RS00925at 294.376 kb on + strand, within ABI39_RS00925at 294.470 kb on + strand, within ABI39_RS00925at 294.484 kb on + strand, within ABI39_RS00925at 294.542 kb on - strand, within ABI39_RS00925at 294.544 kb on + strand, within ABI39_RS00925at 294.592 kb on - strand, within ABI39_RS00925at 294.598 kb on + strand, within ABI39_RS00925at 294.695 kb on + strand, within ABI39_RS00925at 294.735 kb on + strand, within ABI39_RS00925at 294.740 kb on - strand, within ABI39_RS00925at 294.740 kb on - strand, within ABI39_RS00925at 294.741 kb on + strand, within ABI39_RS00925at 294.741 kb on + strand, within ABI39_RS00925at 294.795 kb on - strand, within ABI39_RS00925at 294.903 kb on - strand, within ABI39_RS00925at 294.980 kb on + strand, within ABI39_RS00925at 294.980 kb on + strand, within ABI39_RS00925at 295.005 kb on + strand, within ABI39_RS00925at 295.006 kb on - strand, within ABI39_RS00925at 295.006 kb on - strand, within ABI39_RS00925at 295.021 kb on - strand, within ABI39_RS00925at 295.027 kb on - strand, within ABI39_RS00925at 295.035 kb on - strand, within ABI39_RS00925at 295.151 kb on - strand, within ABI39_RS00925at 295.179 kb on + strand, within ABI39_RS00925at 295.180 kb on - strand, within ABI39_RS00925at 295.218 kb on + strandat 295.251 kb on + strandat 295.258 kb on - strandat 295.290 kb on + strandat 295.293 kb on - strandat 295.393 kb on + strandat 295.394 kb on - strandat 295.395 kb on + strandat 295.399 kb on - strandat 295.399 kb on - strandat 295.435 kb on - strandat 295.477 kb on - strandat 295.480 kb on - strandat 295.555 kb on + strandat 295.769 kb on + strand, within ABI39_RS00930at 295.940 kb on - strand, within ABI39_RS00930at 296.007 kb on - strand, within ABI39_RS00930at 296.042 kb on + strand, within ABI39_RS00930at 296.043 kb on - strand, within ABI39_RS00930at 296.046 kb on + strand, within ABI39_RS00930at 296.386 kb on - strand, within ABI39_RS00930at 296.450 kb on - strand, within ABI39_RS00930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
remove
291,717 - ABI39_RS00920 0.48 -1.3
291,758 + ABI39_RS00920 0.50 -1.3
291,759 - ABI39_RS00920 0.51 -1.3
291,827 + ABI39_RS00920 0.55 -1.4
291,988 + ABI39_RS00920 0.64 -1.9
292,104 - ABI39_RS00920 0.71 -1.3
292,131 + ABI39_RS00920 0.72 -1.5
292,265 - ABI39_RS00920 0.80 -0.8
292,292 - ABI39_RS00920 0.82 -0.6
292,358 + ABI39_RS00920 0.86 -0.8
292,358 + ABI39_RS00920 0.86 -1.4
292,370 + ABI39_RS00920 0.87 -1.4
292,370 + ABI39_RS00920 0.87 -1.0
292,378 + ABI39_RS00920 0.87 -1.7
292,418 + ABI39_RS00920 0.89 -1.1
292,420 + ABI39_RS00920 0.89 -1.1
292,421 - ABI39_RS00920 0.90 -2.0
292,443 + -1.0
292,446 + -2.8
292,453 + -1.6
292,497 + -0.2
292,497 + -1.6
292,497 + -1.6
292,498 + -0.6
292,498 - -1.1
292,502 - -1.0
292,541 + -2.1
292,563 - -0.9
292,734 + -0.7
292,745 + -1.9
292,947 - ABI39_RS00925 0.11 -1.9
292,966 - ABI39_RS00925 0.12 -0.9
293,003 - ABI39_RS00925 0.13 -0.0
293,005 + ABI39_RS00925 0.13 -0.6
293,106 + ABI39_RS00925 0.17 -1.0
293,110 - ABI39_RS00925 0.17 -1.2
293,116 + ABI39_RS00925 0.17 -1.2
293,167 - ABI39_RS00925 0.19 -0.4
293,173 + ABI39_RS00925 0.19 -1.4
293,174 - ABI39_RS00925 0.19 -1.8
293,175 + ABI39_RS00925 0.19 -0.8
293,189 - ABI39_RS00925 0.20 -0.4
293,264 + ABI39_RS00925 0.22 -2.9
293,265 - ABI39_RS00925 0.22 -0.6
293,265 - ABI39_RS00925 0.22 -2.0
293,296 - ABI39_RS00925 0.23 -0.7
293,306 + ABI39_RS00925 0.24 -1.3
293,307 - ABI39_RS00925 0.24 -0.8
293,310 + ABI39_RS00925 0.24 -0.7
293,362 - ABI39_RS00925 0.26 -2.2
293,379 + ABI39_RS00925 0.26 -0.7
293,435 - ABI39_RS00925 0.28 -0.9
293,470 + ABI39_RS00925 0.30 -1.5
293,470 + ABI39_RS00925 0.30 -0.6
293,562 + ABI39_RS00925 0.33 -1.1
293,563 - ABI39_RS00925 0.33 -1.7
293,583 + ABI39_RS00925 0.34 -1.0
293,758 - ABI39_RS00925 0.40 -1.8
293,788 - ABI39_RS00925 0.41 -0.4
293,862 + ABI39_RS00925 0.43 -1.7
293,863 - ABI39_RS00925 0.43 -1.1
293,890 - ABI39_RS00925 0.44 -2.1
293,908 + ABI39_RS00925 0.45 -0.2
293,908 + ABI39_RS00925 0.45 -2.5
293,955 - ABI39_RS00925 0.47 -1.5
294,003 + ABI39_RS00925 0.48 -0.5
294,055 + ABI39_RS00925 0.50 -1.4
294,117 + ABI39_RS00925 0.52 -1.9
294,158 + ABI39_RS00925 0.54 -0.4
294,159 + ABI39_RS00925 0.54 +0.2
294,159 - ABI39_RS00925 0.54 -1.6
294,213 - ABI39_RS00925 0.56 -0.7
294,251 + ABI39_RS00925 0.57 -1.4
294,251 + ABI39_RS00925 0.57 -1.7
294,256 - ABI39_RS00925 0.57 -2.6
294,298 - ABI39_RS00925 0.59 -2.0
294,298 - ABI39_RS00925 0.59 -0.8
294,298 - ABI39_RS00925 0.59 -0.7
294,304 + ABI39_RS00925 0.59 -2.1
294,304 + ABI39_RS00925 0.59 -3.5
294,324 + ABI39_RS00925 0.60 -1.8
294,339 + ABI39_RS00925 0.60 -1.6
294,376 + ABI39_RS00925 0.61 -0.6
294,470 + ABI39_RS00925 0.65 -2.7
294,484 + ABI39_RS00925 0.65 -1.8
294,542 - ABI39_RS00925 0.67 -1.8
294,544 + ABI39_RS00925 0.67 -1.2
294,592 - ABI39_RS00925 0.69 +0.5
294,598 + ABI39_RS00925 0.69 -0.9
294,695 + ABI39_RS00925 0.73 -0.9
294,735 + ABI39_RS00925 0.74 -1.0
294,740 - ABI39_RS00925 0.74 -0.8
294,740 - ABI39_RS00925 0.74 -2.1
294,741 + ABI39_RS00925 0.74 -1.0
294,741 + ABI39_RS00925 0.74 -2.5
294,795 - ABI39_RS00925 0.76 -1.7
294,903 - ABI39_RS00925 0.80 -0.8
294,980 + ABI39_RS00925 0.83 -2.9
294,980 + ABI39_RS00925 0.83 -2.9
295,005 + ABI39_RS00925 0.83 -0.3
295,006 - ABI39_RS00925 0.83 +0.2
295,006 - ABI39_RS00925 0.83 -1.3
295,021 - ABI39_RS00925 0.84 -0.6
295,027 - ABI39_RS00925 0.84 -2.0
295,035 - ABI39_RS00925 0.84 -1.3
295,151 - ABI39_RS00925 0.89 -1.3
295,179 + ABI39_RS00925 0.90 -1.1
295,180 - ABI39_RS00925 0.90 -1.0
295,218 + +0.0
295,251 + -0.5
295,258 - -1.6
295,290 + -1.7
295,293 - -2.0
295,393 + -0.8
295,394 - -2.3
295,395 + -1.6
295,399 - +0.1
295,399 - -1.7
295,435 - -1.1
295,477 - -1.3
295,480 - -1.6
295,555 + -0.3
295,769 + ABI39_RS00930 0.13 -1.0
295,940 - ABI39_RS00930 0.21 -1.3
296,007 - ABI39_RS00930 0.25 -0.2
296,042 + ABI39_RS00930 0.27 -2.3
296,043 - ABI39_RS00930 0.27 -0.2
296,046 + ABI39_RS00930 0.27 -1.4
296,386 - ABI39_RS00930 0.44 -1.2
296,450 - ABI39_RS00930 0.47 -0.7

Or see this region's nucleotide sequence