Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00920

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS00915 and ABI39_RS00920 are separated by 83 nucleotidesABI39_RS00920 and ABI39_RS00925 are separated by 28 nucleotides ABI39_RS00915: ABI39_RS00915 - hypothetical protein, at 290,014 to 290,817 _RS00915 ABI39_RS00920: ABI39_RS00920 - RagB/SusD family nutrient uptake outer membrane protein, at 290,901 to 292,598 _RS00920 ABI39_RS00925: ABI39_RS00925 - SusC/RagA family TonB-linked outer membrane protein, at 292,627 to 295,476 _RS00925 Position (kb) 290 291 292 293Strain fitness (log2 ratio) -3 -2 -1 0 1at 289.904 kb on + strandat 289.907 kb on - strandat 289.907 kb on - strandat 289.912 kb on + strandat 290.092 kb on + strandat 290.093 kb on - strandat 290.093 kb on - strandat 290.141 kb on + strand, within ABI39_RS00915at 290.167 kb on + strand, within ABI39_RS00915at 290.168 kb on - strand, within ABI39_RS00915at 290.212 kb on - strand, within ABI39_RS00915at 290.252 kb on - strand, within ABI39_RS00915at 290.326 kb on - strand, within ABI39_RS00915at 290.367 kb on + strand, within ABI39_RS00915at 290.396 kb on - strand, within ABI39_RS00915at 290.458 kb on - strand, within ABI39_RS00915at 290.501 kb on - strand, within ABI39_RS00915at 290.502 kb on + strand, within ABI39_RS00915at 290.502 kb on + strand, within ABI39_RS00915at 290.505 kb on + strand, within ABI39_RS00915at 290.505 kb on + strand, within ABI39_RS00915at 290.510 kb on + strand, within ABI39_RS00915at 290.557 kb on + strand, within ABI39_RS00915at 290.562 kb on + strand, within ABI39_RS00915at 290.572 kb on + strand, within ABI39_RS00915at 290.584 kb on + strand, within ABI39_RS00915at 290.602 kb on + strand, within ABI39_RS00915at 290.697 kb on - strand, within ABI39_RS00915at 290.697 kb on - strand, within ABI39_RS00915at 290.698 kb on + strand, within ABI39_RS00915at 290.779 kb on + strandat 290.805 kb on + strandat 290.805 kb on + strandat 290.806 kb on - strandat 290.969 kb on - strandat 291.063 kb on + strandat 291.127 kb on - strand, within ABI39_RS00920at 291.127 kb on - strand, within ABI39_RS00920at 291.213 kb on - strand, within ABI39_RS00920at 291.217 kb on - strand, within ABI39_RS00920at 291.225 kb on + strand, within ABI39_RS00920at 291.302 kb on - strand, within ABI39_RS00920at 291.560 kb on + strand, within ABI39_RS00920at 291.619 kb on + strand, within ABI39_RS00920at 291.620 kb on - strand, within ABI39_RS00920at 291.717 kb on - strand, within ABI39_RS00920at 291.758 kb on + strand, within ABI39_RS00920at 291.759 kb on - strand, within ABI39_RS00920at 291.827 kb on + strand, within ABI39_RS00920at 291.988 kb on + strand, within ABI39_RS00920at 292.104 kb on - strand, within ABI39_RS00920at 292.131 kb on + strand, within ABI39_RS00920at 292.265 kb on - strand, within ABI39_RS00920at 292.292 kb on - strand, within ABI39_RS00920at 292.358 kb on + strand, within ABI39_RS00920at 292.358 kb on + strand, within ABI39_RS00920at 292.370 kb on + strand, within ABI39_RS00920at 292.370 kb on + strand, within ABI39_RS00920at 292.378 kb on + strand, within ABI39_RS00920at 292.418 kb on + strand, within ABI39_RS00920at 292.420 kb on + strand, within ABI39_RS00920at 292.421 kb on - strand, within ABI39_RS00920at 292.443 kb on + strandat 292.446 kb on + strandat 292.453 kb on + strandat 292.497 kb on + strandat 292.497 kb on + strandat 292.497 kb on + strandat 292.498 kb on + strandat 292.498 kb on - strandat 292.502 kb on - strandat 292.541 kb on + strandat 292.563 kb on - strandat 292.734 kb on + strandat 292.745 kb on + strandat 292.947 kb on - strand, within ABI39_RS00925at 292.966 kb on - strand, within ABI39_RS00925at 293.003 kb on - strand, within ABI39_RS00925at 293.005 kb on + strand, within ABI39_RS00925at 293.106 kb on + strand, within ABI39_RS00925at 293.110 kb on - strand, within ABI39_RS00925at 293.116 kb on + strand, within ABI39_RS00925at 293.167 kb on - strand, within ABI39_RS00925at 293.173 kb on + strand, within ABI39_RS00925at 293.174 kb on - strand, within ABI39_RS00925at 293.175 kb on + strand, within ABI39_RS00925at 293.189 kb on - strand, within ABI39_RS00925at 293.264 kb on + strand, within ABI39_RS00925at 293.265 kb on - strand, within ABI39_RS00925at 293.265 kb on - strand, within ABI39_RS00925at 293.296 kb on - strand, within ABI39_RS00925at 293.306 kb on + strand, within ABI39_RS00925at 293.307 kb on - strand, within ABI39_RS00925at 293.310 kb on + strand, within ABI39_RS00925at 293.362 kb on - strand, within ABI39_RS00925at 293.379 kb on + strand, within ABI39_RS00925at 293.435 kb on - strand, within ABI39_RS00925at 293.470 kb on + strand, within ABI39_RS00925at 293.470 kb on + strand, within ABI39_RS00925at 293.562 kb on + strand, within ABI39_RS00925at 293.563 kb on - strand, within ABI39_RS00925at 293.583 kb on + strand, within ABI39_RS00925

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
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289,904 + -0.5
289,907 - -0.4
289,907 - +1.2
289,912 + -0.6
290,092 + +0.5
290,093 - +1.4
290,093 - -0.7
290,141 + ABI39_RS00915 0.16 -0.5
290,167 + ABI39_RS00915 0.19 +0.5
290,168 - ABI39_RS00915 0.19 -1.8
290,212 - ABI39_RS00915 0.25 +0.3
290,252 - ABI39_RS00915 0.30 -0.6
290,326 - ABI39_RS00915 0.39 +1.4
290,367 + ABI39_RS00915 0.44 -1.3
290,396 - ABI39_RS00915 0.48 +0.2
290,458 - ABI39_RS00915 0.55 -0.3
290,501 - ABI39_RS00915 0.61 +0.2
290,502 + ABI39_RS00915 0.61 -2.3
290,502 + ABI39_RS00915 0.61 +0.7
290,505 + ABI39_RS00915 0.61 +0.2
290,505 + ABI39_RS00915 0.61 +0.1
290,510 + ABI39_RS00915 0.62 -0.8
290,557 + ABI39_RS00915 0.68 -1.1
290,562 + ABI39_RS00915 0.68 -1.1
290,572 + ABI39_RS00915 0.69 -1.8
290,584 + ABI39_RS00915 0.71 -1.6
290,602 + ABI39_RS00915 0.73 -0.1
290,697 - ABI39_RS00915 0.85 +0.2
290,697 - ABI39_RS00915 0.85 +0.8
290,698 + ABI39_RS00915 0.85 -0.5
290,779 + +0.3
290,805 + -0.5
290,805 + -0.5
290,806 - +1.3
290,969 - -1.6
291,063 + -1.6
291,127 - ABI39_RS00920 0.13 -0.8
291,127 - ABI39_RS00920 0.13 -1.7
291,213 - ABI39_RS00920 0.18 -1.6
291,217 - ABI39_RS00920 0.19 -0.8
291,225 + ABI39_RS00920 0.19 -0.6
291,302 - ABI39_RS00920 0.24 -0.9
291,560 + ABI39_RS00920 0.39 -0.4
291,619 + ABI39_RS00920 0.42 -1.7
291,620 - ABI39_RS00920 0.42 -1.3
291,717 - ABI39_RS00920 0.48 -1.3
291,758 + ABI39_RS00920 0.50 -1.3
291,759 - ABI39_RS00920 0.51 -1.3
291,827 + ABI39_RS00920 0.55 -1.4
291,988 + ABI39_RS00920 0.64 -1.9
292,104 - ABI39_RS00920 0.71 -1.3
292,131 + ABI39_RS00920 0.72 -1.5
292,265 - ABI39_RS00920 0.80 -0.8
292,292 - ABI39_RS00920 0.82 -0.6
292,358 + ABI39_RS00920 0.86 -0.8
292,358 + ABI39_RS00920 0.86 -1.4
292,370 + ABI39_RS00920 0.87 -1.4
292,370 + ABI39_RS00920 0.87 -1.0
292,378 + ABI39_RS00920 0.87 -1.7
292,418 + ABI39_RS00920 0.89 -1.1
292,420 + ABI39_RS00920 0.89 -1.1
292,421 - ABI39_RS00920 0.90 -2.0
292,443 + -1.0
292,446 + -2.8
292,453 + -1.6
292,497 + -0.2
292,497 + -1.6
292,497 + -1.6
292,498 + -0.6
292,498 - -1.1
292,502 - -1.0
292,541 + -2.1
292,563 - -0.9
292,734 + -0.7
292,745 + -1.9
292,947 - ABI39_RS00925 0.11 -1.9
292,966 - ABI39_RS00925 0.12 -0.9
293,003 - ABI39_RS00925 0.13 -0.0
293,005 + ABI39_RS00925 0.13 -0.6
293,106 + ABI39_RS00925 0.17 -1.0
293,110 - ABI39_RS00925 0.17 -1.2
293,116 + ABI39_RS00925 0.17 -1.2
293,167 - ABI39_RS00925 0.19 -0.4
293,173 + ABI39_RS00925 0.19 -1.4
293,174 - ABI39_RS00925 0.19 -1.8
293,175 + ABI39_RS00925 0.19 -0.8
293,189 - ABI39_RS00925 0.20 -0.4
293,264 + ABI39_RS00925 0.22 -2.9
293,265 - ABI39_RS00925 0.22 -0.6
293,265 - ABI39_RS00925 0.22 -2.0
293,296 - ABI39_RS00925 0.23 -0.7
293,306 + ABI39_RS00925 0.24 -1.3
293,307 - ABI39_RS00925 0.24 -0.8
293,310 + ABI39_RS00925 0.24 -0.7
293,362 - ABI39_RS00925 0.26 -2.2
293,379 + ABI39_RS00925 0.26 -0.7
293,435 - ABI39_RS00925 0.28 -0.9
293,470 + ABI39_RS00925 0.30 -1.5
293,470 + ABI39_RS00925 0.30 -0.6
293,562 + ABI39_RS00925 0.33 -1.1
293,563 - ABI39_RS00925 0.33 -1.7
293,583 + ABI39_RS00925 0.34 -1.0

Or see this region's nucleotide sequence