Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00435

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
121,695	+		ABI39_RS00430	0.76	+0.5
121,716	-		ABI39_RS00430	0.76	+0.1
121,730	-		ABI39_RS00430	0.77	+0.3
121,740	+		ABI39_RS00430	0.77	-1.8
121,765	+		ABI39_RS00430	0.78	+0.5
121,831	-		ABI39_RS00430	0.81	+2.9
121,832	+		ABI39_RS00430	0.81	-0.1
121,934	+		ABI39_RS00430	0.85	-0.9
121,934	+		ABI39_RS00430	0.85	+0.7
121,935	-		ABI39_RS00430	0.85	-0.9
121,980	-		ABI39_RS00430	0.87	-1.6
121,985	-		ABI39_RS00430	0.87	-0.4
122,073	-				+0.4
122,140	+				+1.1
122,199	+				+0.3
122,200	-				+2.9
122,293	-				-0.6
122,412	-				+0.9
122,414	-				+0.8
122,428	+				-0.5
122,429	-				-1.1
122,429	-				-0.4
122,601	+				+0.2
122,729	+				+1.4
122,750	+				+0.4
122,826	+		ABI39_RS00435	0.11	+0.1
122,912	+		ABI39_RS00435	0.17	+2.4
122,930	-		ABI39_RS00435	0.18	-1.4
122,943	+		ABI39_RS00435	0.19	-0.3
123,019	-		ABI39_RS00435	0.24	-1.2
123,283	-		ABI39_RS00435	0.42	+0.7
123,284	+		ABI39_RS00435	0.42	+1.1
123,328	+		ABI39_RS00435	0.45	+3.5
123,396	+		ABI39_RS00435	0.49	+0.8
123,501	+		ABI39_RS00435	0.56	+1.9
123,575	+		ABI39_RS00435	0.61	+0.8
123,612	-		ABI39_RS00435	0.64	-0.1
123,639	+		ABI39_RS00435	0.66	-1.4
123,681	-		ABI39_RS00435	0.68	+1.6
123,721	-		ABI39_RS00435	0.71	-0.4
123,902	+		ABI39_RS00435	0.83	+2.3
123,915	-		ABI39_RS00435	0.84	-1.1
123,915	-		ABI39_RS00435	0.84	-0.0
123,998	-		ABI39_RS00435	0.89	+0.0
124,162	-				-0.2
124,214	+				-0.7
124,252	+				+1.2
124,308	-				+0.3
124,374	+				+1.4
124,375	-				+1.5
124,380	-				+0.1
124,380	-				+2.7
124,380	-				+0.6
124,382	-				+2.9
124,406	+				-0.4
124,413	+				+1.0
124,446	+				+0.8
124,479	+				+0.3
124,480	-				+2.5
124,482	-				-0.0
124,556	+		ABI39_RS00440	0.11	-0.6
124,558	+		ABI39_RS00440	0.11	+0.4
124,579	+		ABI39_RS00440	0.12	+3.7
124,580	-		ABI39_RS00440	0.12	+4.7
124,638	+		ABI39_RS00440	0.14	-0.3
124,639	-		ABI39_RS00440	0.14	-0.2
124,652	+		ABI39_RS00440	0.15	+3.9
124,652	+		ABI39_RS00440	0.15	-0.6
124,652	+		ABI39_RS00440	0.15	-0.1
124,653	-		ABI39_RS00440	0.15	+0.4
124,704	+		ABI39_RS00440	0.17	+2.7
124,705	-		ABI39_RS00440	0.17	-0.6
124,934	-		ABI39_RS00440	0.25	+1.3
124,992	-		ABI39_RS00440	0.27	-0.7
125,118	+		ABI39_RS00440	0.31	+0.5
125,119	-		ABI39_RS00440	0.31	-0.5
125,119	-		ABI39_RS00440	0.31	-0.3