Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25835

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
14,928	+				-2.3
14,932	-				+1.6
14,932	-				+0.7
14,991	-		LU632_RS25820	0.27	+2.4
15,010	-		LU632_RS25820	0.39	-0.4
15,133	+				-0.5
15,137	+				+1.6
15,137	+				-1.0
15,139	+				-1.2
15,140	-				+1.4
15,208	+		LU632_RS25825	0.35	+1.2
15,209	-		LU632_RS25825	0.36	-3.2
15,209	-		LU632_RS25825	0.36	-1.7
15,209	-		LU632_RS25825	0.36	-0.9
15,211	+		LU632_RS25825	0.37	-1.4
15,220	+		LU632_RS25825	0.40	-0.7
15,220	+		LU632_RS25825	0.40	-0.2
15,220	+		LU632_RS25825	0.40	-1.2
15,221	-		LU632_RS25825	0.41	-1.3
15,381	+				-1.4
15,394	-				-2.5
15,438	+				-0.5
15,531	+				-0.8
15,644	+		LU632_RS25830	0.56	-1.0
15,645	-		LU632_RS25830	0.57	+0.5
15,655	-		LU632_RS25830	0.64	+1.4
15,675	-		LU632_RS25830	0.78	-0.1
15,830	-				-0.1
15,831	+				+2.9
15,831	+				-2.8
15,832	-				+1.8
15,832	-				-3.0
15,833	+				+2.1
15,833	+				-0.4
15,833	+				-0.9
15,833	+				+2.6
15,833	+				-0.8
15,833	+				-1.9
15,833	+				+0.4
15,833	+				-1.2
15,834	-				+2.3
15,834	-				-0.6
15,834	-				+1.5
15,835	+				+1.2
15,835	+				+0.1
15,835	+				+0.5
15,835	+				+1.4
15,835	+				-1.0
15,836	-				-1.9
15,836	-				-0.7
15,836	-				-0.7
15,836	-				-1.2
15,836	-				-1.1
15,859	-				+0.4
15,859	-				+1.3
15,919	-				-2.4
15,920	+				-1.4
15,920	+				-1.4
15,920	+				+0.3
15,921	-				-1.2
15,922	+				+0.4
15,922	+				+0.1
15,922	+				+0.6
15,923	-				-1.5
15,928	-				+0.1
15,933	+				+0.1
16,008	+		LU632_RS25835	0.21	+0.6
16,008	+		LU632_RS25835	0.21	+0.8
16,008	+		LU632_RS25835	0.21	+0.7
16,008	+		LU632_RS25835	0.21	+0.3
16,008	+		LU632_RS25835	0.21	+2.1
16,009	-		LU632_RS25835	0.21	-0.9
16,032	+		LU632_RS25835	0.27	+0.3
16,032	+		LU632_RS25835	0.27	+0.7
16,033	-		LU632_RS25835	0.28	+1.5
16,315	+				-1.9
16,315	+				-0.2
16,315	+				+0.5
16,315	+				+0.5
16,319	+				+1.0
16,358	+				-1.0
16,410	+				+0.6
16,410	+				-0.2
16,411	-				-1.8
16,475	+				+0.8
16,476	-				-0.6
16,526	+				+0.4
16,527	-				+0.5
16,527	-				+1.0
16,527	-				-0.9
16,532	+				+0.6
16,532	+				+0.5
16,532	+				-2.1
16,532	+				-2.8
16,532	+				+2.6
16,533	-				+1.4
16,635	+	traC	LU632_RS25840	0.13	-0.7
16,704	+	traC	LU632_RS25840	0.15	+1.0
16,776	+	traC	LU632_RS25840	0.18	+1.6
16,777	-	traC	LU632_RS25840	0.18	+0.1
16,778	+	traC	LU632_RS25840	0.18	+1.6
16,778	+	traC	LU632_RS25840	0.18	-2.1
16,779	-	traC	LU632_RS25840	0.18	+1.2
16,779	-	traC	LU632_RS25840	0.18	+0.7
16,881	+	traC	LU632_RS25840	0.22	+0.4
16,881	+	traC	LU632_RS25840	0.22	+1.1
16,881	+	traC	LU632_RS25840	0.22	-1.5
17,081	-	traC	LU632_RS25840	0.30	-1.3
17,156	+	traC	LU632_RS25840	0.33	+0.7
17,182	+	traC	LU632_RS25840	0.34	+2.4
17,183	-	traC	LU632_RS25840	0.34	-0.9
17,183	-	traC	LU632_RS25840	0.34	+1.7
17,183	-	traC	LU632_RS25840	0.34	+0.2
17,183	-	traC	LU632_RS25840	0.34	+1.1
17,187	-	traC	LU632_RS25840	0.34	+0.3
17,187	-	traC	LU632_RS25840	0.34	+0.4