Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25330 and LU632_RS25335 overlap by 59 nucleotides LU632_RS25335 and LU632_RS25340 are separated by 7 nucleotides LU632_RS25340 and LU632_RS25345 are separated by 100 nucleotides
LU632_RS25330: LU632_RS25330 - DUF5710 domain-containing protein, at 214 to 840
_RS25330
LU632_RS25335: LU632_RS25335 - hypothetical protein, at 782 to 3,604
_RS25335
LU632_RS25340: LU632_RS25340 - hypothetical protein, at 3,612 to 4,055
_RS25340
LU632_RS25345: LU632_RS25345 - DotI/IcmL family type IV secretion protein, at 4,156 to 4,776
_RS25345
Position (kb) 0
1
2
3
4 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 0.045 kb on + strand at 0.072 kb on + strand at 0.209 kb on + strand at 0.209 kb on + strand at 0.209 kb on + strand at 0.210 kb on - strand at 0.210 kb on - strand at 0.210 kb on - strand at 0.213 kb on + strand at 0.226 kb on - strand at 0.226 kb on - strand at 0.230 kb on - strand at 0.238 kb on - strand at 0.238 kb on - strand at 0.298 kb on + strand, within LU632_RS25330 at 0.298 kb on + strand, within LU632_RS25330 at 0.298 kb on + strand, within LU632_RS25330 at 0.298 kb on + strand, within LU632_RS25330 at 0.299 kb on - strand, within LU632_RS25330 at 0.299 kb on - strand, within LU632_RS25330 at 0.299 kb on - strand, within LU632_RS25330 at 0.299 kb on - strand, within LU632_RS25330 at 0.299 kb on - strand, within LU632_RS25330 at 0.299 kb on - strand, within LU632_RS25330 at 0.310 kb on + strand, within LU632_RS25330 at 0.560 kb on + strand, within LU632_RS25330 at 0.560 kb on + strand, within LU632_RS25330 at 0.560 kb on + strand, within LU632_RS25330 at 0.560 kb on + strand, within LU632_RS25330 at 0.561 kb on - strand, within LU632_RS25330 at 0.561 kb on - strand, within LU632_RS25330 at 0.561 kb on - strand, within LU632_RS25330 at 0.562 kb on + strand, within LU632_RS25330 at 0.562 kb on + strand, within LU632_RS25330 at 0.598 kb on + strand, within LU632_RS25330 at 0.658 kb on + strand, within LU632_RS25330 at 0.658 kb on + strand, within LU632_RS25330 at 0.658 kb on + strand, within LU632_RS25330 at 0.659 kb on - strand, within LU632_RS25330 at 0.659 kb on - strand, within LU632_RS25330 at 0.659 kb on - strand, within LU632_RS25330 at 0.722 kb on + strand, within LU632_RS25330 at 0.722 kb on + strand, within LU632_RS25330 at 0.723 kb on - strand, within LU632_RS25330 at 0.723 kb on - strand, within LU632_RS25330 at 0.723 kb on - strand, within LU632_RS25330 at 0.809 kb on + strand at 0.810 kb on - strand at 0.857 kb on - strand at 0.861 kb on - strand at 0.861 kb on - strand at 0.861 kb on - strand at 0.883 kb on - strand at 0.883 kb on - strand at 0.887 kb on - strand at 0.887 kb on - strand at 0.917 kb on + strand at 0.917 kb on + strand at 0.918 kb on - strand at 0.918 kb on - strand at 1.032 kb on - strand at 1.050 kb on + strand at 1.051 kb on - strand at 1.256 kb on + strand, within LU632_RS25335 at 1.257 kb on - strand, within LU632_RS25335 at 1.334 kb on - strand, within LU632_RS25335 at 1.420 kb on + strand, within LU632_RS25335 at 1.517 kb on - strand, within LU632_RS25335 at 1.546 kb on + strand, within LU632_RS25335 at 1.546 kb on + strand, within LU632_RS25335 at 1.547 kb on - strand, within LU632_RS25335 at 1.547 kb on - strand, within LU632_RS25335 at 1.549 kb on - strand, within LU632_RS25335 at 1.549 kb on - strand, within LU632_RS25335 at 1.549 kb on - strand, within LU632_RS25335 at 1.668 kb on + strand, within LU632_RS25335 at 1.668 kb on + strand, within LU632_RS25335 at 1.668 kb on + strand, within LU632_RS25335 at 1.668 kb on + strand, within LU632_RS25335 at 1.668 kb on + strand, within LU632_RS25335 at 1.669 kb on - strand, within LU632_RS25335 at 1.669 kb on - strand, within LU632_RS25335 at 1.669 kb on - strand, within LU632_RS25335 at 1.669 kb on - strand, within LU632_RS25335 at 1.716 kb on + strand, within LU632_RS25335 at 1.858 kb on - strand, within LU632_RS25335 at 1.858 kb on - strand, within LU632_RS25335 at 2.105 kb on - strand, within LU632_RS25335 at 2.162 kb on + strand, within LU632_RS25335 at 2.162 kb on + strand, within LU632_RS25335 at 2.163 kb on - strand, within LU632_RS25335 at 2.364 kb on + strand, within LU632_RS25335 at 2.364 kb on + strand, within LU632_RS25335 at 2.365 kb on - strand, within LU632_RS25335 at 2.365 kb on - strand, within LU632_RS25335 at 2.365 kb on - strand, within LU632_RS25335 at 2.494 kb on - strand, within LU632_RS25335 at 2.494 kb on - strand, within LU632_RS25335 at 2.494 kb on - strand, within LU632_RS25335 at 2.497 kb on + strand, within LU632_RS25335 at 2.498 kb on - strand, within LU632_RS25335 at 2.643 kb on + strand, within LU632_RS25335 at 2.643 kb on + strand, within LU632_RS25335 at 2.667 kb on - strand, within LU632_RS25335 at 2.699 kb on + strand, within LU632_RS25335 at 2.699 kb on + strand, within LU632_RS25335 at 2.699 kb on + strand, within LU632_RS25335 at 2.700 kb on - strand, within LU632_RS25335 at 2.807 kb on + strand, within LU632_RS25335 at 2.807 kb on + strand, within LU632_RS25335 at 2.808 kb on - strand, within LU632_RS25335 at 2.808 kb on - strand, within LU632_RS25335 at 2.830 kb on + strand, within LU632_RS25335 at 2.830 kb on + strand, within LU632_RS25335 at 2.831 kb on - strand, within LU632_RS25335 at 2.831 kb on - strand, within LU632_RS25335 at 2.831 kb on - strand, within LU632_RS25335 at 2.873 kb on + strand, within LU632_RS25335 at 2.982 kb on - strand, within LU632_RS25335 at 2.982 kb on - strand, within LU632_RS25335 at 2.982 kb on - strand, within LU632_RS25335 at 2.982 kb on - strand, within LU632_RS25335 at 3.078 kb on - strand, within LU632_RS25335 at 3.078 kb on - strand, within LU632_RS25335 at 3.080 kb on - strand, within LU632_RS25335 at 3.276 kb on + strand, within LU632_RS25335 at 3.617 kb on + strand at 3.708 kb on - strand, within LU632_RS25340 at 3.721 kb on - strand, within LU632_RS25340 at 3.804 kb on - strand, within LU632_RS25340 at 3.906 kb on + strand, within LU632_RS25340 at 3.907 kb on - strand, within LU632_RS25340 at 3.907 kb on - strand, within LU632_RS25340 at 3.940 kb on - strand, within LU632_RS25340 at 4.023 kb on - strand at 4.038 kb on + strand at 4.038 kb on + strand at 4.038 kb on + strand at 4.038 kb on + strand at 4.038 kb on + strand at 4.039 kb on - strand at 4.039 kb on - strand at 4.039 kb on - strand at 4.039 kb on - strand at 4.135 kb on + strand at 4.136 kb on - strand at 4.136 kb on - strand at 4.200 kb on + strand at 4.300 kb on + strand, within LU632_RS25345 at 4.443 kb on - strand, within LU632_RS25345 at 4.443 kb on - strand, within LU632_RS25345 at 4.487 kb on - strand, within LU632_RS25345 at 4.487 kb on - strand, within LU632_RS25345 at 4.489 kb on + strand, within LU632_RS25345 at 4.490 kb on - strand, within LU632_RS25345 at 4.490 kb on - strand, within LU632_RS25345 at 4.490 kb on - strand, within LU632_RS25345
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:PE, population C11, passage 1 (PE-S-C11-P1) remove 45 + -0.6 72 + +0.2 209 + +0.1 209 + +0.7 209 + +0.7 210 - -0.1 210 - -1.1 210 - -3.1 213 + -3.2 226 - +0.1 226 - +0.1 230 - -1.9 238 - -1.7 238 - +0.9 298 + LU632_RS25330 0.13 -0.5 298 + LU632_RS25330 0.13 +0.1 298 + LU632_RS25330 0.13 -0.7 298 + LU632_RS25330 0.13 -1.1 299 - LU632_RS25330 0.14 -1.9 299 - LU632_RS25330 0.14 +1.4 299 - LU632_RS25330 0.14 -1.7 299 - LU632_RS25330 0.14 +0.4 299 - LU632_RS25330 0.14 +0.2 299 - LU632_RS25330 0.14 -1.7 310 + LU632_RS25330 0.15 +1.5 560 + LU632_RS25330 0.55 -0.2 560 + LU632_RS25330 0.55 +1.0 560 + LU632_RS25330 0.55 -0.7 560 + LU632_RS25330 0.55 +4.1 561 - LU632_RS25330 0.55 -0.5 561 - LU632_RS25330 0.55 +0.5 561 - LU632_RS25330 0.55 -1.2 562 + LU632_RS25330 0.56 -3.2 562 + LU632_RS25330 0.56 +1.2 598 + LU632_RS25330 0.61 -1.0 658 + LU632_RS25330 0.71 +0.8 658 + LU632_RS25330 0.71 +0.2 658 + LU632_RS25330 0.71 -1.6 659 - LU632_RS25330 0.71 +0.1 659 - LU632_RS25330 0.71 -0.3 659 - LU632_RS25330 0.71 -0.9 722 + LU632_RS25330 0.81 +1.5 722 + LU632_RS25330 0.81 -1.0 723 - LU632_RS25330 0.81 +0.4 723 - LU632_RS25330 0.81 +0.4 723 - LU632_RS25330 0.81 -0.0 809 + +0.1 810 - +6.2 857 - +0.1 861 - -0.7 861 - -0.4 861 - -0.2 883 - +0.6 883 - -0.1 887 - -1.5 887 - -1.5 917 + -0.1 917 + -1.7 918 - -1.3 918 - +1.8 1,032 - +0.1 1,050 + +1.8 1,051 - -0.2 1,256 + LU632_RS25335 0.17 -2.1 1,257 - LU632_RS25335 0.17 +1.2 1,334 - LU632_RS25335 0.20 -0.1 1,420 + LU632_RS25335 0.23 +3.1 1,517 - LU632_RS25335 0.26 -1.8 1,546 + LU632_RS25335 0.27 -1.0 1,546 + LU632_RS25335 0.27 -0.2 1,547 - LU632_RS25335 0.27 -3.2 1,547 - LU632_RS25335 0.27 +1.1 1,549 - LU632_RS25335 0.27 -2.3 1,549 - LU632_RS25335 0.27 +0.7 1,549 - LU632_RS25335 0.27 +0.1 1,668 + LU632_RS25335 0.31 -0.8 1,668 + LU632_RS25335 0.31 -0.9 1,668 + LU632_RS25335 0.31 -0.9 1,668 + LU632_RS25335 0.31 -0.7 1,668 + LU632_RS25335 0.31 -0.3 1,669 - LU632_RS25335 0.31 -0.2 1,669 - LU632_RS25335 0.31 +0.9 1,669 - LU632_RS25335 0.31 -2.7 1,669 - LU632_RS25335 0.31 -0.0 1,716 + LU632_RS25335 0.33 -1.3 1,858 - LU632_RS25335 0.38 -1.5 1,858 - LU632_RS25335 0.38 -2.6 2,105 - LU632_RS25335 0.47 -1.7 2,162 + LU632_RS25335 0.49 +2.8 2,162 + LU632_RS25335 0.49 -0.9 2,163 - LU632_RS25335 0.49 -0.4 2,364 + LU632_RS25335 0.56 -1.1 2,364 + LU632_RS25335 0.56 -3.1 2,365 - LU632_RS25335 0.56 +1.0 2,365 - LU632_RS25335 0.56 -1.8 2,365 - LU632_RS25335 0.56 +1.1 2,494 - LU632_RS25335 0.61 -0.3 2,494 - LU632_RS25335 0.61 +1.3 2,494 - LU632_RS25335 0.61 +1.1 2,497 + LU632_RS25335 0.61 +0.1 2,498 - LU632_RS25335 0.61 +1.0 2,643 + LU632_RS25335 0.66 -1.3 2,643 + LU632_RS25335 0.66 -0.6 2,667 - LU632_RS25335 0.67 -1.3 2,699 + LU632_RS25335 0.68 +0.4 2,699 + LU632_RS25335 0.68 -3.0 2,699 + LU632_RS25335 0.68 +2.2 2,700 - LU632_RS25335 0.68 +2.1 2,807 + LU632_RS25335 0.72 -0.3 2,807 + LU632_RS25335 0.72 +4.1 2,808 - LU632_RS25335 0.72 +0.6 2,808 - LU632_RS25335 0.72 -1.1 2,830 + LU632_RS25335 0.73 -0.8 2,830 + LU632_RS25335 0.73 -1.3 2,831 - LU632_RS25335 0.73 -1.1 2,831 - LU632_RS25335 0.73 +3.7 2,831 - LU632_RS25335 0.73 +1.4 2,873 + LU632_RS25335 0.74 +2.2 2,982 - LU632_RS25335 0.78 +1.7 2,982 - LU632_RS25335 0.78 -0.0 2,982 - LU632_RS25335 0.78 -1.3 2,982 - LU632_RS25335 0.78 +0.8 3,078 - LU632_RS25335 0.81 +0.9 3,078 - LU632_RS25335 0.81 -0.9 3,080 - LU632_RS25335 0.81 +0.3 3,276 + LU632_RS25335 0.88 -0.7 3,617 + -1.7 3,708 - LU632_RS25340 0.22 +0.6 3,721 - LU632_RS25340 0.25 -2.2 3,804 - LU632_RS25340 0.43 +0.8 3,906 + LU632_RS25340 0.66 +0.1 3,907 - LU632_RS25340 0.66 -0.2 3,907 - LU632_RS25340 0.66 +1.0 3,940 - LU632_RS25340 0.74 -1.5 4,023 - -1.6 4,038 + -0.5 4,038 + +1.4 4,038 + -1.7 4,038 + +1.7 4,038 + -0.7 4,039 - -0.3 4,039 - -0.5 4,039 - +1.0 4,039 - -1.8 4,135 + +3.0 4,136 - +0.4 4,136 - -1.5 4,200 + -0.5 4,300 + LU632_RS25345 0.23 -2.3 4,443 - LU632_RS25345 0.46 +1.9 4,443 - LU632_RS25345 0.46 -0.1 4,487 - LU632_RS25345 0.53 +0.9 4,487 - LU632_RS25345 0.53 +0.1 4,489 + LU632_RS25345 0.54 +1.0 4,490 - LU632_RS25345 0.54 -2.5 4,490 - LU632_RS25345 0.54 -1.8 4,490 - LU632_RS25345 0.54 +1.3
Or see this region's nucleotide sequence