Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24690

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS24680 and LU632_RS24685 are separated by 228 nucleotidesLU632_RS24685 and LU632_RS24690 overlap by 98 nucleotidesLU632_RS24690 and ovoA are separated by 91 nucleotides LU632_RS24680: LU632_RS24680 - IS91 family transposase, at 4,700,581 to 4,701,804 _RS24680 LU632_RS24685: LU632_RS24685 - transposase zinc-binding domain-containing protein, at 4,702,033 to 4,702,581 _RS24685 LU632_RS24690: LU632_RS24690 - transposase, at 4,702,484 to 4,703,257 _RS24690 LU632_RS24695: ovoA - 5-histidylcysteine sulfoxide synthase, at 4,703,349 to 4,705,457 ovoA Position (kb) 4702 4703 4704Strain fitness (log2 ratio) -1 0 1 2 3at 4703.493 kb on + strandat 4703.556 kb on + strandat 4703.561 kb on + strand, within ovoAat 4703.564 kb on + strand, within ovoAat 4703.564 kb on + strand, within ovoAat 4703.565 kb on - strand, within ovoAat 4703.598 kb on - strand, within ovoAat 4703.598 kb on - strand, within ovoAat 4703.674 kb on - strand, within ovoAat 4703.741 kb on + strand, within ovoAat 4703.823 kb on - strand, within ovoAat 4703.972 kb on - strand, within ovoAat 4704.081 kb on + strand, within ovoA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
remove
4,703,493 + +0.7
4,703,556 + -0.2
4,703,561 + ovoA LU632_RS24695 0.10 -1.0
4,703,564 + ovoA LU632_RS24695 0.10 +0.1
4,703,564 + ovoA LU632_RS24695 0.10 +1.9
4,703,565 - ovoA LU632_RS24695 0.10 -0.2
4,703,598 - ovoA LU632_RS24695 0.12 -1.2
4,703,598 - ovoA LU632_RS24695 0.12 +2.9
4,703,674 - ovoA LU632_RS24695 0.15 +0.3
4,703,741 + ovoA LU632_RS24695 0.19 -0.7
4,703,823 - ovoA LU632_RS24695 0.22 -0.9
4,703,972 - ovoA LU632_RS24695 0.30 +1.6
4,704,081 + ovoA LU632_RS24695 0.35 +0.8

Or see this region's nucleotide sequence