Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22860
Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Experiment:PE, population C11, passage 1 (PE-S-C11-P1) |
---|---|---|---|---|---|
remove | |||||
4,352,105 | - | -3.2 | |||
4,352,105 | - | +1.5 | |||
4,352,112 | - | -2.5 | |||
4,352,112 | - | +2.2 | |||
4,352,112 | - | +0.6 | |||
4,352,143 | - | -3.4 | |||
4,352,143 | - | -0.9 | |||
4,352,143 | - | -0.7 | |||
4,352,351 | - | LU632_RS22860 | 0.14 | +1.5 | |
4,352,424 | - | LU632_RS22860 | 0.21 | +1.7 | |
4,352,465 | - | LU632_RS22860 | 0.25 | +1.2 | |
4,353,213 | - | -2.9 | |||
4,353,252 | - | -3.2 | |||
4,353,332 | - | -1.8 | |||
4,353,350 | - | -3.4 | |||
4,353,439 | - | aroB | LU632_RS22865 | 0.13 | -2.2 |
4,353,439 | - | aroB | LU632_RS22865 | 0.13 | -0.7 |
4,353,503 | - | aroB | LU632_RS22865 | 0.19 | -1.8 |
4,353,824 | - | aroB | LU632_RS22865 | 0.49 | -1.8 |
4,353,824 | - | aroB | LU632_RS22865 | 0.49 | +0.7 |
4,354,010 | - | aroB | LU632_RS22865 | 0.66 | -0.2 |
4,354,157 | - | aroB | LU632_RS22865 | 0.79 | -2.4 |
4,354,197 | - | aroB | LU632_RS22865 | 0.83 | +1.1 |
4,354,197 | - | aroB | LU632_RS22865 | 0.83 | -0.2 |
Or see this region's nucleotide sequence