Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22815 and ppiA are separated by 102 nucleotides ppiA and tsgA are separated by 274 nucleotides tsgA and LU632_RS22830 are separated by 45 nucleotides
LU632_RS22815: LU632_RS22815 - aminodeoxychorismate synthase component II, at 4,344,173 to 4,344,748
_RS22815
LU632_RS22820: ppiA - peptidylprolyl isomerase A, at 4,344,851 to 4,345,423
ppiA
LU632_RS22825: tsgA - MFS transporter TsgA, at 4,345,698 to 4,346,882
tsgA
LU632_RS22830: LU632_RS22830 - cytosine deaminase, at 4,346,928 to 4,348,205
_RS22830
Position (kb) 4345
4346
4347 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4344.726 kb on + strand at 4344.727 kb on - strand at 4344.727 kb on - strand at 4344.776 kb on + strand at 4344.835 kb on - strand at 4344.965 kb on - strand, within ppiA at 4345.084 kb on + strand, within ppiA at 4345.084 kb on + strand, within ppiA at 4345.090 kb on + strand, within ppiA at 4345.148 kb on - strand, within ppiA at 4345.192 kb on + strand, within ppiA at 4345.193 kb on - strand, within ppiA at 4345.222 kb on + strand, within ppiA at 4345.229 kb on - strand, within ppiA at 4345.229 kb on - strand, within ppiA at 4345.230 kb on + strand, within ppiA at 4345.322 kb on - strand, within ppiA at 4345.411 kb on + strand at 4345.441 kb on - strand at 4345.509 kb on + strand at 4345.510 kb on - strand at 4345.525 kb on + strand at 4345.526 kb on - strand at 4345.531 kb on + strand at 4345.557 kb on + strand at 4345.558 kb on - strand at 4345.561 kb on + strand at 4345.561 kb on + strand at 4345.562 kb on - strand at 4345.563 kb on + strand at 4345.564 kb on - strand at 4345.585 kb on + strand at 4345.585 kb on + strand at 4345.585 kb on + strand at 4345.585 kb on + strand at 4345.585 kb on + strand at 4345.588 kb on + strand at 4345.614 kb on + strand at 4345.615 kb on - strand at 4345.615 kb on - strand at 4345.746 kb on + strand at 4345.746 kb on + strand at 4345.796 kb on + strand at 4345.797 kb on - strand at 4345.806 kb on + strand at 4345.807 kb on - strand at 4345.925 kb on - strand, within tsgA at 4345.943 kb on - strand, within tsgA at 4345.943 kb on - strand, within tsgA at 4346.011 kb on + strand, within tsgA at 4346.012 kb on - strand, within tsgA at 4346.020 kb on + strand, within tsgA at 4346.021 kb on - strand, within tsgA at 4346.070 kb on + strand, within tsgA at 4346.194 kb on - strand, within tsgA at 4346.201 kb on + strand, within tsgA at 4346.207 kb on - strand, within tsgA at 4346.346 kb on + strand, within tsgA at 4346.346 kb on + strand, within tsgA at 4346.346 kb on + strand, within tsgA at 4346.347 kb on - strand, within tsgA at 4346.347 kb on - strand, within tsgA at 4346.389 kb on - strand, within tsgA at 4346.397 kb on - strand, within tsgA at 4346.457 kb on + strand, within tsgA at 4346.458 kb on - strand, within tsgA at 4346.458 kb on - strand, within tsgA at 4346.458 kb on - strand, within tsgA at 4346.459 kb on + strand, within tsgA at 4346.459 kb on + strand, within tsgA at 4346.459 kb on + strand, within tsgA at 4346.459 kb on + strand, within tsgA at 4346.460 kb on - strand, within tsgA at 4346.460 kb on - strand, within tsgA at 4346.460 kb on - strand, within tsgA at 4346.460 kb on - strand, within tsgA at 4346.513 kb on + strand, within tsgA at 4346.519 kb on + strand, within tsgA at 4346.553 kb on + strand, within tsgA at 4346.567 kb on + strand, within tsgA at 4346.597 kb on + strand, within tsgA at 4346.627 kb on + strand, within tsgA at 4346.627 kb on + strand, within tsgA at 4346.628 kb on - strand, within tsgA at 4346.631 kb on + strand, within tsgA at 4346.631 kb on + strand, within tsgA at 4346.787 kb on - strand at 4346.816 kb on + strand at 4346.816 kb on + strand at 4346.816 kb on + strand at 4346.817 kb on - strand at 4346.817 kb on - strand at 4346.891 kb on - strand at 4346.965 kb on + strand at 4347.023 kb on - strand at 4347.108 kb on - strand, within LU632_RS22830 at 4347.108 kb on - strand, within LU632_RS22830 at 4347.108 kb on - strand, within LU632_RS22830 at 4347.126 kb on + strand, within LU632_RS22830 at 4347.126 kb on + strand, within LU632_RS22830 at 4347.127 kb on - strand, within LU632_RS22830 at 4347.127 kb on - strand, within LU632_RS22830 at 4347.132 kb on + strand, within LU632_RS22830 at 4347.132 kb on + strand, within LU632_RS22830 at 4347.220 kb on + strand, within LU632_RS22830 at 4347.221 kb on - strand, within LU632_RS22830 at 4347.232 kb on - strand, within LU632_RS22830 at 4347.232 kb on - strand, within LU632_RS22830 at 4347.232 kb on - strand, within LU632_RS22830 at 4347.252 kb on - strand, within LU632_RS22830 at 4347.344 kb on + strand, within LU632_RS22830 at 4347.344 kb on + strand, within LU632_RS22830 at 4347.349 kb on - strand, within LU632_RS22830 at 4347.349 kb on - strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.439 kb on - strand, within LU632_RS22830 at 4347.439 kb on - strand, within LU632_RS22830 at 4347.439 kb on - strand, within LU632_RS22830 at 4347.440 kb on + strand, within LU632_RS22830 at 4347.440 kb on + strand, within LU632_RS22830 at 4347.453 kb on - strand, within LU632_RS22830 at 4347.582 kb on + strand, within LU632_RS22830 at 4347.583 kb on - strand, within LU632_RS22830 at 4347.583 kb on - strand, within LU632_RS22830 at 4347.587 kb on + strand, within LU632_RS22830 at 4347.587 kb on + strand, within LU632_RS22830 at 4347.590 kb on + strand, within LU632_RS22830 at 4347.591 kb on - strand, within LU632_RS22830 at 4347.591 kb on - strand, within LU632_RS22830 at 4347.741 kb on - strand, within LU632_RS22830
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:PE, population C11, passage 1 (PE-S-C11-P1) remove 4,344,726 + +0.7 4,344,727 - -0.1 4,344,727 - -1.6 4,344,776 + -2.1 4,344,835 - -0.4 4,344,965 - ppiA LU632_RS22820 0.20 -2.5 4,345,084 + ppiA LU632_RS22820 0.41 +1.0 4,345,084 + ppiA LU632_RS22820 0.41 +0.1 4,345,090 + ppiA LU632_RS22820 0.42 +0.4 4,345,148 - ppiA LU632_RS22820 0.52 +0.5 4,345,192 + ppiA LU632_RS22820 0.60 -0.0 4,345,193 - ppiA LU632_RS22820 0.60 -0.7 4,345,222 + ppiA LU632_RS22820 0.65 +0.5 4,345,229 - ppiA LU632_RS22820 0.66 +0.3 4,345,229 - ppiA LU632_RS22820 0.66 +0.6 4,345,230 + ppiA LU632_RS22820 0.66 -2.8 4,345,322 - ppiA LU632_RS22820 0.82 -0.9 4,345,411 + +2.5 4,345,441 - +0.5 4,345,509 + +0.0 4,345,510 - -0.3 4,345,525 + -0.0 4,345,526 - -0.4 4,345,531 + -1.5 4,345,557 + +1.1 4,345,558 - +0.7 4,345,561 + -1.8 4,345,561 + -1.9 4,345,562 - +0.5 4,345,563 + -2.5 4,345,564 - -0.7 4,345,585 + -2.2 4,345,585 + +0.1 4,345,585 + -2.8 4,345,585 + -0.3 4,345,585 + -0.0 4,345,588 + +2.7 4,345,614 + +0.5 4,345,615 - -0.3 4,345,615 - +1.9 4,345,746 + -0.5 4,345,746 + -1.2 4,345,796 + -0.1 4,345,797 - -0.7 4,345,806 + +1.2 4,345,807 - -0.9 4,345,925 - tsgA LU632_RS22825 0.19 -1.7 4,345,943 - tsgA LU632_RS22825 0.21 +0.1 4,345,943 - tsgA LU632_RS22825 0.21 +0.6 4,346,011 + tsgA LU632_RS22825 0.26 +1.7 4,346,012 - tsgA LU632_RS22825 0.26 -0.7 4,346,020 + tsgA LU632_RS22825 0.27 +0.9 4,346,021 - tsgA LU632_RS22825 0.27 +0.1 4,346,070 + tsgA LU632_RS22825 0.31 +0.5 4,346,194 - tsgA LU632_RS22825 0.42 -0.3 4,346,201 + tsgA LU632_RS22825 0.42 +1.2 4,346,207 - tsgA LU632_RS22825 0.43 -0.2 4,346,346 + tsgA LU632_RS22825 0.55 +1.6 4,346,346 + tsgA LU632_RS22825 0.55 +0.8 4,346,346 + tsgA LU632_RS22825 0.55 +0.6 4,346,347 - tsgA LU632_RS22825 0.55 -0.2 4,346,347 - tsgA LU632_RS22825 0.55 -2.7 4,346,389 - tsgA LU632_RS22825 0.58 +0.5 4,346,397 - tsgA LU632_RS22825 0.59 -0.1 4,346,457 + tsgA LU632_RS22825 0.64 +1.9 4,346,458 - tsgA LU632_RS22825 0.64 -2.9 4,346,458 - tsgA LU632_RS22825 0.64 +0.9 4,346,458 - tsgA LU632_RS22825 0.64 +1.4 4,346,459 + tsgA LU632_RS22825 0.64 -0.1 4,346,459 + tsgA LU632_RS22825 0.64 +1.1 4,346,459 + tsgA LU632_RS22825 0.64 -0.2 4,346,459 + tsgA LU632_RS22825 0.64 +1.3 4,346,460 - tsgA LU632_RS22825 0.64 -0.9 4,346,460 - tsgA LU632_RS22825 0.64 +1.5 4,346,460 - tsgA LU632_RS22825 0.64 -0.1 4,346,460 - tsgA LU632_RS22825 0.64 -0.7 4,346,513 + tsgA LU632_RS22825 0.69 +0.7 4,346,519 + tsgA LU632_RS22825 0.69 +1.9 4,346,553 + tsgA LU632_RS22825 0.72 +0.4 4,346,567 + tsgA LU632_RS22825 0.73 +0.7 4,346,597 + tsgA LU632_RS22825 0.76 -2.0 4,346,627 + tsgA LU632_RS22825 0.78 +2.4 4,346,627 + tsgA LU632_RS22825 0.78 +1.7 4,346,628 - tsgA LU632_RS22825 0.78 -2.6 4,346,631 + tsgA LU632_RS22825 0.79 -1.0 4,346,631 + tsgA LU632_RS22825 0.79 -1.2 4,346,787 - +0.8 4,346,816 + -2.3 4,346,816 + -0.5 4,346,816 + -3.7 4,346,817 - +0.1 4,346,817 - -1.6 4,346,891 - -0.0 4,346,965 + -1.6 4,347,023 - +1.3 4,347,108 - LU632_RS22830 0.14 +0.5 4,347,108 - LU632_RS22830 0.14 +0.6 4,347,108 - LU632_RS22830 0.14 +0.1 4,347,126 + LU632_RS22830 0.15 -1.5 4,347,126 + LU632_RS22830 0.15 +0.9 4,347,127 - LU632_RS22830 0.16 +0.2 4,347,127 - LU632_RS22830 0.16 -0.9 4,347,132 + LU632_RS22830 0.16 +0.8 4,347,132 + LU632_RS22830 0.16 +0.4 4,347,220 + LU632_RS22830 0.23 -0.6 4,347,221 - LU632_RS22830 0.23 -0.5 4,347,232 - LU632_RS22830 0.24 +1.0 4,347,232 - LU632_RS22830 0.24 +0.9 4,347,232 - LU632_RS22830 0.24 -0.6 4,347,252 - LU632_RS22830 0.25 -0.0 4,347,344 + LU632_RS22830 0.33 -0.0 4,347,344 + LU632_RS22830 0.33 -0.9 4,347,349 - LU632_RS22830 0.33 +0.2 4,347,349 - LU632_RS22830 0.33 -0.8 4,347,438 + LU632_RS22830 0.40 -1.1 4,347,438 + LU632_RS22830 0.40 -1.1 4,347,438 + LU632_RS22830 0.40 +0.2 4,347,438 + LU632_RS22830 0.40 +1.9 4,347,438 + LU632_RS22830 0.40 +0.2 4,347,438 + LU632_RS22830 0.40 +1.0 4,347,439 - LU632_RS22830 0.40 +2.0 4,347,439 - LU632_RS22830 0.40 -0.5 4,347,439 - LU632_RS22830 0.40 +1.1 4,347,440 + LU632_RS22830 0.40 +1.9 4,347,440 + LU632_RS22830 0.40 +0.2 4,347,453 - LU632_RS22830 0.41 -0.2 4,347,582 + LU632_RS22830 0.51 -0.4 4,347,583 - LU632_RS22830 0.51 +3.7 4,347,583 - LU632_RS22830 0.51 +3.6 4,347,587 + LU632_RS22830 0.52 +0.3 4,347,587 + LU632_RS22830 0.52 +1.5 4,347,590 + LU632_RS22830 0.52 +1.2 4,347,591 - LU632_RS22830 0.52 -0.2 4,347,591 - LU632_RS22830 0.52 +2.4 4,347,741 - LU632_RS22830 0.64 -0.9
Or see this region's nucleotide sequence