Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22815

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
4,343,235	+		LU632_RS22810	0.30	-2.2
4,343,235	+		LU632_RS22810	0.30	-0.5
4,343,249	+		LU632_RS22810	0.31	-3.1
4,343,249	+		LU632_RS22810	0.31	-2.1
4,343,250	-		LU632_RS22810	0.31	-1.9
4,343,250	-		LU632_RS22810	0.31	-1.7
4,343,359	-		LU632_RS22810	0.40	-1.1
4,343,405	+		LU632_RS22810	0.44	-4.1
4,343,405	+		LU632_RS22810	0.44	-0.2
4,343,464	+		LU632_RS22810	0.49	-3.4
4,343,465	-		LU632_RS22810	0.49	-2.2
4,343,543	+		LU632_RS22810	0.55	+0.1
4,343,566	+		LU632_RS22810	0.57	-2.7
4,343,570	-		LU632_RS22810	0.57	+0.7
4,343,588	-		LU632_RS22810	0.59	-0.5
4,343,725	-		LU632_RS22810	0.70	-1.5
4,343,957	-		LU632_RS22810	0.89	-0.9
4,343,959	-		LU632_RS22810	0.89	-3.5
4,344,040	+				-1.2
4,344,160	+				-2.4
4,344,161	-				-0.6
4,344,184	+				+2.1
4,344,242	+		LU632_RS22815	0.12	-0.7
4,344,726	+				+0.7
4,344,727	-				-0.1
4,344,727	-				-1.6
4,344,776	+				-2.1
4,344,835	-				-0.4
4,344,965	-	ppiA	LU632_RS22820	0.20	-2.5
4,345,084	+	ppiA	LU632_RS22820	0.41	+1.0
4,345,084	+	ppiA	LU632_RS22820	0.41	+0.1
4,345,090	+	ppiA	LU632_RS22820	0.42	+0.4
4,345,148	-	ppiA	LU632_RS22820	0.52	+0.5
4,345,192	+	ppiA	LU632_RS22820	0.60	-0.0
4,345,193	-	ppiA	LU632_RS22820	0.60	-0.7
4,345,222	+	ppiA	LU632_RS22820	0.65	+0.5
4,345,229	-	ppiA	LU632_RS22820	0.66	+0.3
4,345,229	-	ppiA	LU632_RS22820	0.66	+0.6
4,345,230	+	ppiA	LU632_RS22820	0.66	-2.8
4,345,322	-	ppiA	LU632_RS22820	0.82	-0.9
4,345,411	+				+2.5
4,345,441	-				+0.5
4,345,509	+				+0.0
4,345,510	-				-0.3
4,345,525	+				-0.0
4,345,526	-				-0.4
4,345,531	+				-1.5
4,345,557	+				+1.1
4,345,558	-				+0.7
4,345,561	+				-1.8
4,345,561	+				-1.9
4,345,562	-				+0.5
4,345,563	+				-2.5
4,345,564	-				-0.7
4,345,585	+				-2.2
4,345,585	+				+0.1
4,345,585	+				-2.8
4,345,585	+				-0.3
4,345,585	+				-0.0
4,345,588	+				+2.7
4,345,614	+				+0.5
4,345,615	-				-0.3
4,345,615	-				+1.9
4,345,746	+				-0.5
4,345,746	+				-1.2