Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22510 and zntR are separated by 137 nucleotides zntR and LU632_RS22520 overlap by 1 nucleotides LU632_RS22520 and rplQ are separated by 104 nucleotides rplQ and rpoA are separated by 40 nucleotides
LU632_RS22510: LU632_RS22510 - IS1 family transposase, at 4,301,325 to 4,302,021
_RS22510
LU632_RS22515: zntR - Zn(2+)-responsive transcriptional regulator, at 4,302,159 to 4,302,581
zntR
LU632_RS22520: LU632_RS22520 - DUF1992 domain-containing protein, at 4,302,581 to 4,302,940
_RS22520
LU632_RS22525: rplQ - 50S ribosomal protein L17, at 4,303,045 to 4,303,431
rplQ
LU632_RS22530: rpoA - DNA-directed RNA polymerase subunit alpha, at 4,303,472 to 4,304,461
rpoA
Position (kb) 4302
4303 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4301.166 kb on + strand at 4301.169 kb on + strand at 4301.232 kb on + strand at 4301.233 kb on - strand at 4302.070 kb on - strand at 4302.173 kb on + strand at 4302.173 kb on + strand at 4302.173 kb on + strand at 4302.173 kb on + strand at 4302.176 kb on + strand at 4302.176 kb on + strand at 4302.177 kb on - strand at 4302.177 kb on - strand at 4302.192 kb on + strand at 4302.276 kb on - strand, within zntR at 4302.276 kb on - strand, within zntR at 4302.283 kb on - strand, within zntR at 4302.291 kb on - strand, within zntR at 4302.330 kb on - strand, within zntR at 4302.374 kb on + strand, within zntR at 4302.374 kb on + strand, within zntR at 4302.378 kb on + strand, within zntR at 4302.381 kb on + strand, within zntR at 4302.381 kb on + strand, within zntR at 4302.382 kb on - strand, within zntR at 4302.382 kb on - strand, within zntR at 4302.382 kb on - strand, within zntR at 4302.382 kb on - strand, within zntR at 4302.405 kb on - strand, within zntR at 4302.461 kb on + strand, within zntR at 4302.462 kb on - strand, within zntR at 4302.464 kb on - strand, within zntR at 4302.575 kb on + strand at 4302.576 kb on - strand at 4302.576 kb on - strand at 4302.578 kb on - strand at 4302.582 kb on + strand at 4302.583 kb on - strand at 4302.583 kb on - strand at 4302.608 kb on + strand at 4302.608 kb on + strand at 4302.609 kb on - strand at 4302.621 kb on + strand, within LU632_RS22520 at 4302.621 kb on + strand, within LU632_RS22520 at 4302.633 kb on - strand, within LU632_RS22520 at 4302.663 kb on - strand, within LU632_RS22520 at 4302.715 kb on + strand, within LU632_RS22520 at 4302.715 kb on + strand, within LU632_RS22520 at 4302.716 kb on - strand, within LU632_RS22520 at 4302.755 kb on + strand, within LU632_RS22520 at 4302.944 kb on - strand at 4302.944 kb on - strand at 4302.996 kb on + strand at 4302.997 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:PE, population C11, passage 1 (PE-S-C11-P1) remove 4,301,166 + +1.7 4,301,169 + -1.9 4,301,232 + -0.1 4,301,233 - +3.1 4,302,070 - +0.3 4,302,173 + -0.5 4,302,173 + +1.8 4,302,173 + +2.4 4,302,173 + -0.2 4,302,176 + -1.4 4,302,176 + -2.1 4,302,177 - -1.1 4,302,177 - +0.0 4,302,192 + +0.7 4,302,276 - zntR LU632_RS22515 0.28 +2.1 4,302,276 - zntR LU632_RS22515 0.28 -0.1 4,302,283 - zntR LU632_RS22515 0.29 -1.9 4,302,291 - zntR LU632_RS22515 0.31 +0.6 4,302,330 - zntR LU632_RS22515 0.40 -0.5 4,302,374 + zntR LU632_RS22515 0.51 -1.2 4,302,374 + zntR LU632_RS22515 0.51 -1.9 4,302,378 + zntR LU632_RS22515 0.52 +0.8 4,302,381 + zntR LU632_RS22515 0.52 -1.8 4,302,381 + zntR LU632_RS22515 0.52 +3.9 4,302,382 - zntR LU632_RS22515 0.53 +1.4 4,302,382 - zntR LU632_RS22515 0.53 -1.2 4,302,382 - zntR LU632_RS22515 0.53 -0.1 4,302,382 - zntR LU632_RS22515 0.53 -0.7 4,302,405 - zntR LU632_RS22515 0.58 -1.8 4,302,461 + zntR LU632_RS22515 0.71 -1.8 4,302,462 - zntR LU632_RS22515 0.72 -0.7 4,302,464 - zntR LU632_RS22515 0.72 -1.8 4,302,575 + -1.7 4,302,576 - -2.9 4,302,576 - +0.2 4,302,578 - +0.5 4,302,582 + +0.2 4,302,583 - -3.0 4,302,583 - -1.7 4,302,608 + +3.8 4,302,608 + -0.4 4,302,609 - -1.9 4,302,621 + LU632_RS22520 0.11 +0.2 4,302,621 + LU632_RS22520 0.11 -2.5 4,302,633 - LU632_RS22520 0.14 +0.9 4,302,663 - LU632_RS22520 0.23 +0.4 4,302,715 + LU632_RS22520 0.37 +1.6 4,302,715 + LU632_RS22520 0.37 +0.9 4,302,716 - LU632_RS22520 0.38 +0.6 4,302,755 + LU632_RS22520 0.48 +0.5 4,302,944 - +1.8 4,302,944 - +0.3 4,302,996 + -0.4 4,302,997 - -1.9
Or see this region's nucleotide sequence