Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21385

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
4,086,548	-				-2.5
4,086,581	+				+1.5
4,086,582	-				+0.9
4,086,623	+				+0.4
4,086,623	-				+1.2
4,086,662	+				+0.4
4,086,663	-				+0.7
4,086,663	-				+0.5
4,086,708	+				+1.0
4,086,755	-				+1.9
4,086,763	+				-1.2
4,086,764	-				+0.6
4,086,947	+				-3.0
4,086,952	+				-1.3
4,086,953	-				+1.3
4,086,954	+				-0.7
4,086,954	+				-2.1
4,086,984	+		LU632_RS21375	0.14	-1.0
4,087,020	-		LU632_RS21375	0.32	-1.1
4,087,106	-		LU632_RS21375	0.77	-1.1
4,087,106	-		LU632_RS21375	0.77	+1.5
4,087,106	-		LU632_RS21375	0.77	-0.1
4,087,107	+		LU632_RS21375	0.78	-0.4
4,087,108	-		LU632_RS21375	0.78	-1.1
4,087,120	+		LU632_RS21375	0.84	+0.7
4,087,121	-		LU632_RS21375	0.85	-0.3
4,087,353	-		LU632_RS21380	0.46	+0.8
4,087,354	+		LU632_RS21380	0.46	+1.5
4,087,354	+		LU632_RS21380	0.46	-2.9
4,087,355	-		LU632_RS21380	0.47	-1.3
4,087,355	-		LU632_RS21380	0.47	+2.0
4,087,355	-		LU632_RS21380	0.47	+0.4
4,087,374	-		LU632_RS21380	0.54	+2.2
4,087,374	-		LU632_RS21380	0.54	+0.4
4,087,436	-		LU632_RS21380	0.77	-0.2
4,087,499	-				+2.5
4,087,532	+				-2.6
4,087,533	-		LU632_RS21385	0.10	-0.1
4,087,551	-		LU632_RS21385	0.21	-0.8
4,087,551	-		LU632_RS21385	0.21	+0.2
4,087,565	+		LU632_RS21385	0.29	-1.1
4,087,566	-		LU632_RS21385	0.29	+0.2
4,087,566	-		LU632_RS21385	0.29	+0.7
4,087,566	-		LU632_RS21385	0.29	+1.3
4,087,566	-		LU632_RS21385	0.29	+0.8
4,087,570	-		LU632_RS21385	0.32	-1.0
4,087,619	+		LU632_RS21385	0.60	-1.8
4,087,657	-		LU632_RS21385	0.82	+0.3
4,088,582	-				-2.9