Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20870

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS20865 and LU632_RS20870 are separated by 72 nucleotidesLU632_RS20870 and LU632_RS20875 are separated by 692 nucleotides LU632_RS20865: LU632_RS20865 - valine--tRNA ligase, at 3,983,386 to 3,986,241 _RS20865 LU632_RS20870: LU632_RS20870 - IS481 family transposase, at 3,986,314 to 3,987,354 _RS20870 LU632_RS20875: LU632_RS20875 - IS3 family transposase, at 3,988,047 to 3,989,078 _RS20875 Position (kb) 3986 3987 3988Strain fitness (log2 ratio) -2 -1 0 1 2at 3986.239 kb on + strandat 3986.239 kb on + strandat 3986.240 kb on - strandat 3986.240 kb on - strandat 3986.253 kb on - strandat 3987.453 kb on + strandat 3987.485 kb on + strandat 3987.527 kb on - strandat 3987.531 kb on + strandat 3987.531 kb on + strandat 3987.562 kb on + strandat 3987.582 kb on + strandat 3987.583 kb on - strandat 3987.635 kb on - strandat 3987.715 kb on + strandat 3987.719 kb on + strandat 3987.720 kb on - strandat 3987.720 kb on - strandat 3987.720 kb on - strandat 3987.985 kb on + strandat 3987.986 kb on - strandat 3987.986 kb on - strandat 3987.989 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
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3,986,239 + -0.9
3,986,239 + +0.1
3,986,240 - -1.0
3,986,240 - -1.3
3,986,253 - +1.0
3,987,453 + +1.1
3,987,485 + +0.9
3,987,527 - -0.9
3,987,531 + +1.1
3,987,531 + +1.6
3,987,562 + -1.1
3,987,582 + -0.4
3,987,583 - +1.3
3,987,635 - -1.4
3,987,715 + +2.3
3,987,719 + -0.5
3,987,720 - -2.0
3,987,720 - -0.1
3,987,720 - +1.3
3,987,985 + -1.3
3,987,986 - +1.3
3,987,986 - -2.1
3,987,989 + -0.5

Or see this region's nucleotide sequence