Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20525

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
3,906,485	+		LU632_RS20520	0.26	+0.1
3,906,485	+		LU632_RS20520	0.26	-1.0
3,906,485	+		LU632_RS20520	0.26	+1.4
3,906,486	-		LU632_RS20520	0.26	+0.1
3,906,553	-		LU632_RS20520	0.32	+1.5
3,906,556	+		LU632_RS20520	0.32	-1.2
3,906,557	-		LU632_RS20520	0.32	-0.9
3,906,557	-		LU632_RS20520	0.32	+0.6
3,906,612	+		LU632_RS20520	0.37	-0.2
3,906,612	+		LU632_RS20520	0.37	-0.0
3,906,613	-		LU632_RS20520	0.37	+0.0
3,906,613	-		LU632_RS20520	0.37	-2.3
3,906,775	-		LU632_RS20520	0.50	+2.2
3,906,786	+		LU632_RS20520	0.51	+0.8
3,906,787	-		LU632_RS20520	0.51	+0.7
3,907,003	+		LU632_RS20520	0.69	-1.2
3,907,105	+		LU632_RS20520	0.78	+1.9
3,907,207	+		LU632_RS20520	0.86	-0.9
3,907,211	-		LU632_RS20520	0.86	-0.9
3,907,236	+		LU632_RS20520	0.88	+1.0
3,907,247	+		LU632_RS20520	0.89	-0.4
3,907,247	+		LU632_RS20520	0.89	+0.4
3,907,248	-		LU632_RS20520	0.89	+1.7
3,907,330	+				+0.0
3,907,330	+				-0.5
3,907,330	+				-1.1
3,907,330	+				+1.1
3,907,413	-				+0.5
3,907,413	-				-1.5
3,907,427	-				+0.2
3,907,431	-				+0.8
3,907,431	-				+0.6
3,907,431	-				+0.6
3,907,433	-				+0.5
3,907,433	-				-2.6
3,907,450	+				-0.7
3,907,450	+				-1.7
3,907,451	-				+0.7
3,907,452	+				-2.6
3,907,452	+				-1.5
3,907,453	-				-0.7
3,907,478	+				-1.1
3,907,514	+		LU632_RS20525	0.14	-0.8
3,907,541	+		LU632_RS20525	0.19	-2.2
3,907,545	-		LU632_RS20525	0.19	+2.1
3,907,556	+		LU632_RS20525	0.21	+2.0
3,907,594	+		LU632_RS20525	0.28	-2.6
3,907,692	-		LU632_RS20525	0.45	+1.0
3,907,710	+		LU632_RS20525	0.48	-0.5
3,907,710	+		LU632_RS20525	0.48	+1.5
3,907,718	+		LU632_RS20525	0.50	+1.1
3,907,719	-		LU632_RS20525	0.50	+1.2
3,907,719	-		LU632_RS20525	0.50	-1.9
3,907,719	-		LU632_RS20525	0.50	-2.1
3,907,780	+		LU632_RS20525	0.61	+1.6
3,907,780	+		LU632_RS20525	0.61	+0.9
3,907,780	+		LU632_RS20525	0.61	+0.4
3,907,781	-		LU632_RS20525	0.61	-1.3
3,907,781	-		LU632_RS20525	0.61	+1.1
3,907,781	-		LU632_RS20525	0.61	-0.9
3,907,782	+		LU632_RS20525	0.61	-1.3
3,907,782	+		LU632_RS20525	0.61	-0.2
3,907,782	+		LU632_RS20525	0.61	+0.6
3,907,782	+		LU632_RS20525	0.61	+0.1
3,907,783	-		LU632_RS20525	0.61	+1.5
3,907,783	-		LU632_RS20525	0.61	+0.9
3,907,784	+		LU632_RS20525	0.61	+0.1
3,907,784	+		LU632_RS20525	0.61	-0.2
3,907,784	+		LU632_RS20525	0.61	-1.2
3,907,784	+		LU632_RS20525	0.61	+0.8
3,907,785	-		LU632_RS20525	0.62	+0.1
3,907,785	-		LU632_RS20525	0.62	-2.1
3,907,785	-		LU632_RS20525	0.62	-2.8
3,907,807	+		LU632_RS20525	0.65	+1.0
3,907,808	-		LU632_RS20525	0.66	+1.7
3,907,817	+		LU632_RS20525	0.67	+1.8
3,907,981	+				+0.5
3,907,981	+				+1.9
3,908,076	-				-0.7
3,908,312	+				-1.6
3,908,413	+				-3.3
3,908,535	-		LU632_RS20530	0.17	-0.3
3,908,550	+		LU632_RS20530	0.18	+1.5
3,908,550	+		LU632_RS20530	0.18	-0.2
3,908,551	-		LU632_RS20530	0.18	+1.0
3,908,551	-		LU632_RS20530	0.18	+1.4
3,908,551	-		LU632_RS20530	0.18	-2.3
3,908,551	-		LU632_RS20530	0.18	+1.4
3,908,552	+		LU632_RS20530	0.18	-0.5
3,908,573	+		LU632_RS20530	0.20	+0.5
3,908,573	+		LU632_RS20530	0.20	-1.0
3,908,589	-		LU632_RS20530	0.21	-1.6
3,908,677	+		LU632_RS20530	0.28	-0.3
3,908,677	+		LU632_RS20530	0.28	-0.6
3,908,678	-		LU632_RS20530	0.28	+1.7
3,908,736	+		LU632_RS20530	0.32	-0.4
3,908,736	+		LU632_RS20530	0.32	-0.1
3,908,737	-		LU632_RS20530	0.32	+1.7
3,908,796	-		LU632_RS20530	0.37	-0.3
3,908,814	-		LU632_RS20530	0.38	-1.1
3,908,888	+		LU632_RS20530	0.44	+0.5
3,908,889	-		LU632_RS20530	0.44	+1.5
3,908,890	+		LU632_RS20530	0.44	-0.9
3,908,891	-		LU632_RS20530	0.44	-0.6
3,908,910	-		LU632_RS20530	0.45	-0.1
3,908,991	-		LU632_RS20530	0.52	+0.7