Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19870

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
3,773,793	+		LU632_RS19855	0.70	-2.1
3,773,793	+		LU632_RS19855	0.70	-1.3
3,773,794	-		LU632_RS19855	0.70	+2.1
3,773,925	-				-2.5
3,773,936	+				+3.4
3,773,937	-				-0.8
3,773,937	-				+0.1
3,773,937	-				+0.8
3,773,937	-				-0.1
3,773,938	+				-1.0
3,773,939	-				-3.0
3,773,940	+				+1.6
3,773,941	-				-0.2
3,773,973	-				-0.0
3,773,986	+				+0.4
3,774,053	-				-2.1
3,774,153	+		LU632_RS19860	0.31	-1.5
3,774,217	+		LU632_RS19860	0.63	-2.7
3,774,217	+		LU632_RS19860	0.63	-2.9
3,774,218	-		LU632_RS19860	0.64	+1.0
3,774,218	-		LU632_RS19860	0.64	+0.5
3,774,228	-		LU632_RS19860	0.69	-0.4
3,774,276	+				+0.3
3,774,276	+				-0.2
3,774,277	-				-0.8
3,774,277	-				-1.9
3,774,319	+	rof	LU632_RS19865	0.16	-1.6
3,774,471	-	rof	LU632_RS19865	0.73	-0.4
3,774,509	+	rof	LU632_RS19865	0.88	-1.8
3,774,510	-	rof	LU632_RS19865	0.88	-0.6
3,774,513	+	rof	LU632_RS19865	0.89	-1.7
3,774,687	-				-1.3
3,776,095	-				+0.4
3,776,095	-				-0.3
3,776,095	-				-2.6
3,776,137	-		LU632_RS19875	0.14	-1.7
3,776,137	-		LU632_RS19875	0.14	-0.5
3,776,161	+		LU632_RS19875	0.20	+0.6
3,776,161	+		LU632_RS19875	0.20	+1.2
3,776,162	-		LU632_RS19875	0.20	+1.3
3,776,179	+		LU632_RS19875	0.24	+0.3
3,776,179	+		LU632_RS19875	0.24	-0.3
3,776,180	-		LU632_RS19875	0.25	+0.0
3,776,308	+		LU632_RS19875	0.57	-1.0
3,776,314	-		LU632_RS19875	0.59	+0.4
3,776,314	-		LU632_RS19875	0.59	+1.8
3,776,404	-		LU632_RS19875	0.82	+2.0
3,776,487	+				+1.0
3,776,579	-				-0.8
3,776,599	-				-1.0
3,776,664	+				+0.8
3,776,664	+				+1.9
3,776,665	-				+0.6
3,776,665	-				+0.4
3,776,683	+				-2.4
3,776,803	-		LU632_RS19880	0.16	+0.6
3,776,812	-		LU632_RS19880	0.18	+1.1
3,776,824	-		LU632_RS19880	0.19	-0.2
3,776,824	-		LU632_RS19880	0.19	+0.3
3,776,824	-		LU632_RS19880	0.19	-1.8
3,776,824	-		LU632_RS19880	0.19	+1.4
3,776,828	+		LU632_RS19880	0.20	-0.7
3,776,828	+		LU632_RS19880	0.20	+1.7
3,776,828	+		LU632_RS19880	0.20	+0.8
3,776,829	-		LU632_RS19880	0.20	+2.0
3,776,829	-		LU632_RS19880	0.20	+0.0
3,776,831	+		LU632_RS19880	0.20	-1.7
3,776,832	-		LU632_RS19880	0.20	-2.3
3,776,917	-		LU632_RS19880	0.32	-2.1
3,776,953	-		LU632_RS19880	0.37	-1.1
3,776,953	-		LU632_RS19880	0.37	-1.0
3,776,953	-		LU632_RS19880	0.37	+0.8