Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18075

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
3,413,155	+		LU632_RS18070	0.41	+1.9
3,413,155	+		LU632_RS18070	0.41	+0.2
3,413,155	+		LU632_RS18070	0.41	-1.3
3,413,156	-		LU632_RS18070	0.41	-1.3
3,413,156	-		LU632_RS18070	0.41	+0.5
3,413,156	-		LU632_RS18070	0.41	+0.1
3,413,156	-		LU632_RS18070	0.41	-0.1
3,413,362	-		LU632_RS18070	0.59	-2.3
3,413,389	-		LU632_RS18070	0.61	+1.0
3,413,389	-		LU632_RS18070	0.61	-0.4
3,413,391	+		LU632_RS18070	0.61	+1.1
3,413,400	+		LU632_RS18070	0.62	-1.7
3,413,401	-		LU632_RS18070	0.62	+1.2
3,413,412	-		LU632_RS18070	0.63	+0.9
3,413,444	-		LU632_RS18070	0.65	+0.9
3,413,486	+		LU632_RS18070	0.69	+1.0
3,413,486	+		LU632_RS18070	0.69	+1.1
3,413,486	+		LU632_RS18070	0.69	-1.5
3,413,486	+		LU632_RS18070	0.69	+1.3
3,413,567	-		LU632_RS18070	0.76	+1.6
3,413,589	-		LU632_RS18070	0.78	+0.2
3,413,726	+		LU632_RS18070	0.89	+1.9
3,413,784	+				+0.6
3,414,024	-				+0.0
3,414,024	-				-0.4
3,414,061	+				+1.4
3,414,106	-				+1.0
3,414,145	-				-0.9
3,414,165	+				+0.7
3,414,165	+				-1.9
3,414,165	+				-0.7
3,414,166	-				+1.1
3,414,166	-				-1.0
3,414,217	-				-1.2
3,414,273	-		LU632_RS18075	0.12	-0.9
3,414,282	-		LU632_RS18075	0.12	+0.4
3,414,462	+		LU632_RS18075	0.23	+2.8
3,414,467	+		LU632_RS18075	0.23	+1.3
3,414,675	+		LU632_RS18075	0.35	-0.4
3,414,676	-		LU632_RS18075	0.35	-2.3
3,414,676	-		LU632_RS18075	0.35	+2.0
3,414,692	+		LU632_RS18075	0.36	-0.7
3,414,692	+		LU632_RS18075	0.36	+0.4
3,414,693	-		LU632_RS18075	0.36	+2.7
3,414,693	-		LU632_RS18075	0.36	-3.3
3,414,696	-		LU632_RS18075	0.37	+0.3
3,414,696	-		LU632_RS18075	0.37	-0.9
3,414,813	-		LU632_RS18075	0.44	-0.4
3,414,926	+		LU632_RS18075	0.50	+1.2
3,414,926	+		LU632_RS18075	0.50	+0.3
3,414,974	+		LU632_RS18075	0.53	-0.8
3,414,975	-		LU632_RS18075	0.53	+1.8
3,415,011	+		LU632_RS18075	0.55	-0.3
3,415,011	+		LU632_RS18075	0.55	-0.8
3,415,153	-		LU632_RS18075	0.64	+0.6
3,415,153	-		LU632_RS18075	0.64	+0.8
3,415,209	+		LU632_RS18075	0.67	+0.0
3,415,209	+		LU632_RS18075	0.67	+1.5
3,415,209	+		LU632_RS18075	0.67	-0.1
3,415,210	-		LU632_RS18075	0.67	-0.2
3,415,210	-		LU632_RS18075	0.67	-0.0
3,415,210	-		LU632_RS18075	0.67	-0.9
3,415,283	+		LU632_RS18075	0.72	-1.9
3,415,284	-		LU632_RS18075	0.72	-2.3
3,415,284	-		LU632_RS18075	0.72	-0.8
3,415,284	-		LU632_RS18075	0.72	+2.7
3,415,313	+		LU632_RS18075	0.73	+0.1
3,415,645	+				+0.3
3,415,645	+				+0.3
3,415,704	+				-0.3
3,415,704	+				+0.6
3,415,705	-				+1.3
3,415,755	+				+3.7
3,415,791	+				-1.7
3,415,791	+				-0.1
3,415,885	-				-0.2
3,415,885	-				-0.4
3,415,885	-				+0.4
3,415,911	+		LU632_RS18080	0.10	+1.1
3,415,965	+		LU632_RS18080	0.14	+0.6
3,415,969	+		LU632_RS18080	0.15	+0.9
3,415,969	+		LU632_RS18080	0.15	+1.4
3,415,970	-		LU632_RS18080	0.15	-2.5
3,415,970	-		LU632_RS18080	0.15	+2.1
3,416,026	+		LU632_RS18080	0.19	-0.5
3,416,055	+		LU632_RS18080	0.21	-1.5
3,416,055	+		LU632_RS18080	0.21	-0.7
3,416,056	-		LU632_RS18080	0.21	-0.3
3,416,056	-		LU632_RS18080	0.21	-1.4
3,416,056	-		LU632_RS18080	0.21	+1.3
3,416,073	+		LU632_RS18080	0.23	-0.4
3,416,074	-		LU632_RS18080	0.23	+0.8
3,416,128	-		LU632_RS18080	0.27	+0.7
3,416,209	+		LU632_RS18080	0.33	-0.2
3,416,209	+		LU632_RS18080	0.33	-0.5
3,416,210	-		LU632_RS18080	0.33	+1.5
3,416,210	-		LU632_RS18080	0.33	+1.3
3,416,211	+		LU632_RS18080	0.33	-2.9
3,416,211	+		LU632_RS18080	0.33	+0.6
3,416,211	+		LU632_RS18080	0.33	-0.3
3,416,211	+		LU632_RS18080	0.33	+0.7
3,416,212	-		LU632_RS18080	0.33	+0.9
3,416,212	-		LU632_RS18080	0.33	+0.2
3,416,212	-		LU632_RS18080	0.33	+1.0
3,416,212	-		LU632_RS18080	0.33	-0.5
3,416,233	+		LU632_RS18080	0.35	-0.0
3,416,240	+		LU632_RS18080	0.36	-0.6
3,416,340	-		LU632_RS18080	0.43	+1.4
3,416,389	+		LU632_RS18080	0.47	-1.7
3,416,389	+		LU632_RS18080	0.47	+1.3
3,416,391	+		LU632_RS18080	0.47	+0.4
3,416,392	-		LU632_RS18080	0.47	+0.2
3,416,392	-		LU632_RS18080	0.47	-0.2
3,416,392	-		LU632_RS18080	0.47	+2.6
3,416,392	-		LU632_RS18080	0.47	-2.0
3,416,510	+		LU632_RS18080	0.56	-1.9
3,416,588	-		LU632_RS18080	0.62	+0.3
3,416,588	-		LU632_RS18080	0.62	-1.3
3,416,628	-		LU632_RS18080	0.65	-0.7
3,416,652	+		LU632_RS18080	0.67	-1.1
3,416,653	-		LU632_RS18080	0.67	+0.1
3,416,653	-		LU632_RS18080	0.67	-1.4