Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15805

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
2,988,754	+		LU632_RS15790	0.78	+0.6
2,988,755	-		LU632_RS15790	0.78	-0.3
2,988,850	+				-0.7
2,988,850	+				-1.6
2,988,851	-				+0.3
2,988,908	+				-0.3
2,988,909	-				+0.1
2,988,911	-				-0.1
2,988,911	-				+1.8
2,988,911	-				-1.0
2,988,931	-				+0.6
2,989,152	+		LU632_RS15795	0.43	+0.5
2,989,152	+		LU632_RS15795	0.43	-4.0
2,989,168	+		LU632_RS15795	0.46	-2.6
2,989,168	+		LU632_RS15795	0.46	+0.2
2,989,168	+		LU632_RS15795	0.46	-0.0
2,989,169	-		LU632_RS15795	0.46	+0.7
2,989,170	+		LU632_RS15795	0.46	+0.6
2,989,170	+		LU632_RS15795	0.46	+0.1
2,989,170	+		LU632_RS15795	0.46	+0.9
2,989,170	+		LU632_RS15795	0.46	-0.3
2,989,170	+		LU632_RS15795	0.46	-1.2
2,989,170	+		LU632_RS15795	0.46	-0.6
2,989,170	+		LU632_RS15795	0.46	+0.1
2,989,170	+		LU632_RS15795	0.46	-3.0
2,989,170	+		LU632_RS15795	0.46	-2.7
2,989,170	+		LU632_RS15795	0.46	-2.7
2,989,171	-		LU632_RS15795	0.47	+1.1
2,989,171	-		LU632_RS15795	0.47	-0.5
2,989,171	-		LU632_RS15795	0.47	-0.3
2,989,171	-		LU632_RS15795	0.47	-0.3
2,989,171	-		LU632_RS15795	0.47	+0.0
2,989,171	-		LU632_RS15795	0.47	-1.4
2,989,171	-		LU632_RS15795	0.47	+0.9
2,989,273	+		LU632_RS15795	0.66	+1.0
2,989,274	-		LU632_RS15795	0.66	-0.3
2,989,274	-		LU632_RS15795	0.66	-0.5
2,989,275	+		LU632_RS15795	0.67	-0.7
2,989,276	-		LU632_RS15795	0.67	+0.0
2,989,276	-		LU632_RS15795	0.67	-0.5
2,989,318	-		LU632_RS15795	0.75	+2.1
2,989,389	-		LU632_RS15795	0.89	+0.4
2,989,455	+				+1.0
2,989,456	-				+1.3
2,989,456	-				+0.1
2,989,459	+				+0.4
2,989,459	+				-0.1
2,989,460	-				-0.6
2,989,460	-				-2.1
2,989,483	+				+0.7
2,989,484	-				-0.2
2,989,503	-				+0.3
2,989,554	-		LU632_RS15800	0.26	+0.1
2,989,559	+		LU632_RS15800	0.33	-1.6
2,989,560	-		LU632_RS15800	0.35	+1.6
2,989,560	-		LU632_RS15800	0.35	+1.0
2,989,668	-				-2.5
2,989,668	-				-0.3
2,989,733	+				-0.4
2,989,915	+		LU632_RS15805	0.53	+3.4
2,989,947	+		LU632_RS15805	0.61	-2.5
2,990,016	-		LU632_RS15805	0.78	-1.6
2,990,019	-		LU632_RS15805	0.79	+0.2
2,990,019	-		LU632_RS15805	0.79	-0.9
2,990,117	+				-2.1
2,990,123	+				+0.9
2,990,124	-				+0.8
2,990,494	-				+1.6
2,990,512	-				+0.8
2,990,512	-				-2.3
2,990,512	-				+0.1
2,990,514	+				-1.3
2,990,548	+				-2.0
2,990,548	+				+1.8
2,990,548	+				+1.7
2,990,569	+		LU632_RS15815	0.10	-0.7
2,990,569	+		LU632_RS15815	0.10	-1.0
2,990,570	-		LU632_RS15815	0.10	+0.7
2,990,570	-		LU632_RS15815	0.10	+1.2
2,990,599	+		LU632_RS15815	0.16	+1.3
2,990,613	+		LU632_RS15815	0.19	+0.7
2,990,645	+		LU632_RS15815	0.26	-2.3
2,990,645	+		LU632_RS15815	0.26	-0.2
2,990,646	-		LU632_RS15815	0.26	-1.3
2,990,917	-		LU632_RS15815	0.83	-0.2
2,991,007	-				+1.9
2,991,018	-				-0.2
2,991,018	-				-1.5
2,991,018	-				-0.4
2,991,074	-				-0.2