Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14680

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS14675 and LU632_RS14680 are separated by 3 nucleotidesLU632_RS14680 and LU632_RS14685 are separated by 256 nucleotides LU632_RS14675: LU632_RS14675 - hypothetical protein, at 2,790,805 to 2,791,816 _RS14675 LU632_RS14680: LU632_RS14680 - hypothetical protein, at 2,791,820 to 2,792,050 _RS14680 LU632_RS14685: LU632_RS14685 - IS1 family transposase, at 2,792,307 to 2,793,004 _RS14685 Position (kb) 2791 2792 2793Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2791.006 kb on - strand, within LU632_RS14675at 2791.557 kb on + strand, within LU632_RS14675at 2791.590 kb on - strand, within LU632_RS14675at 2791.677 kb on - strand, within LU632_RS14675at 2791.703 kb on + strand, within LU632_RS14675at 2791.704 kb on - strand, within LU632_RS14675at 2791.704 kb on - strand, within LU632_RS14675at 2791.985 kb on - strand, within LU632_RS14680at 2792.206 kb on + strandat 2792.206 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
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2,791,006 - LU632_RS14675 0.20 +1.0
2,791,557 + LU632_RS14675 0.74 +0.6
2,791,590 - LU632_RS14675 0.78 -1.1
2,791,677 - LU632_RS14675 0.86 -3.1
2,791,703 + LU632_RS14675 0.89 +1.2
2,791,704 - LU632_RS14675 0.89 +2.0
2,791,704 - LU632_RS14675 0.89 +1.3
2,791,985 - LU632_RS14680 0.71 +0.3
2,792,206 + +1.8
2,792,206 + +1.2

Or see this region's nucleotide sequence