Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13320

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
2,539,050	-		LU632_RS13310	0.70	+0.7
2,539,076	+		LU632_RS13310	0.74	+0.5
2,539,076	+		LU632_RS13310	0.74	+1.6
2,539,076	+		LU632_RS13310	0.74	+0.5
2,539,077	-		LU632_RS13310	0.74	-1.7
2,539,077	-		LU632_RS13310	0.74	-2.5
2,539,077	-		LU632_RS13310	0.74	-2.1
2,539,207	-				-0.2
2,539,245	+				+1.3
2,539,245	+				-1.0
2,539,274	+				+1.0
2,539,274	+				-0.5
2,539,275	-				+0.8
2,539,275	-				+1.7
2,539,280	+				+0.1
2,539,281	-				-1.2
2,539,390	+	exoX	LU632_RS13315	0.16	+1.4
2,539,440	-	exoX	LU632_RS13315	0.23	-0.2
2,539,440	-	exoX	LU632_RS13315	0.23	+0.2
2,539,506	+	exoX	LU632_RS13315	0.33	+1.3
2,539,507	-	exoX	LU632_RS13315	0.33	+0.8
2,539,509	+	exoX	LU632_RS13315	0.33	-1.3
2,539,509	+	exoX	LU632_RS13315	0.33	+2.7
2,539,510	-	exoX	LU632_RS13315	0.33	+1.2
2,539,510	-	exoX	LU632_RS13315	0.33	-1.0
2,539,692	+	exoX	LU632_RS13315	0.60	-3.4
2,539,740	-	exoX	LU632_RS13315	0.67	-0.9
2,539,780	+	exoX	LU632_RS13315	0.73	+1.4
2,539,780	+	exoX	LU632_RS13315	0.73	-0.0
2,539,982	-				-2.1
2,540,052	+				+0.1
2,540,052	+				+1.1
2,540,053	-				+0.7
2,540,103	+				-1.2
2,540,103	+				+1.3
2,540,104	-				-0.6
2,540,104	-				-1.9
2,540,104	-				+0.0
2,540,105	+				+1.4
2,540,105	+				-2.9
2,540,105	+				-1.3
2,540,106	-				-1.0
2,540,182	+				-0.6
2,540,194	-				-1.5
2,540,267	-		LU632_RS13320	0.11	+0.6
2,540,284	+		LU632_RS13320	0.12	+0.9
2,540,284	+		LU632_RS13320	0.12	-1.3
2,540,284	+		LU632_RS13320	0.12	+1.9
2,540,284	+		LU632_RS13320	0.12	-2.3
2,540,284	+		LU632_RS13320	0.12	-3.9
2,540,285	-		LU632_RS13320	0.12	+0.5
2,540,285	-		LU632_RS13320	0.12	+1.4
2,540,285	-		LU632_RS13320	0.12	-0.0
2,540,285	-		LU632_RS13320	0.12	-1.4
2,540,286	+		LU632_RS13320	0.12	+1.5
2,540,286	+		LU632_RS13320	0.12	+2.6
2,540,340	-		LU632_RS13320	0.15	-1.5
2,540,340	-		LU632_RS13320	0.15	-0.9
2,540,345	+		LU632_RS13320	0.15	+1.8
2,540,345	+		LU632_RS13320	0.15	+0.8
2,540,346	-		LU632_RS13320	0.15	+0.4
2,540,395	+		LU632_RS13320	0.17	-0.3
2,540,531	+		LU632_RS13320	0.24	+0.6
2,540,531	+		LU632_RS13320	0.24	-2.0
2,540,532	-		LU632_RS13320	0.24	+0.2
2,540,633	+		LU632_RS13320	0.29	+1.0
2,540,772	+		LU632_RS13320	0.35	-3.1
2,540,772	+		LU632_RS13320	0.35	-0.5
2,540,772	+		LU632_RS13320	0.35	+1.4
2,540,976	-		LU632_RS13320	0.45	-1.9
2,541,052	-		LU632_RS13320	0.49	-0.5
2,541,052	-		LU632_RS13320	0.49	+1.7
2,541,306	+		LU632_RS13320	0.61	-3.7
2,541,353	+		LU632_RS13320	0.63	-1.0
2,541,353	+		LU632_RS13320	0.63	+1.0
2,541,354	-		LU632_RS13320	0.63	+0.2
2,541,393	+		LU632_RS13320	0.65	-2.9
2,541,393	+		LU632_RS13320	0.65	-0.2
2,541,423	+		LU632_RS13320	0.67	-2.0
2,541,423	+		LU632_RS13320	0.67	-1.6
2,541,424	-		LU632_RS13320	0.67	-1.4
2,541,425	+		LU632_RS13320	0.67	+1.5
2,541,438	-		LU632_RS13320	0.67	-2.8
2,541,461	+		LU632_RS13320	0.68	+0.3
2,541,461	+		LU632_RS13320	0.68	+0.5
2,541,461	+		LU632_RS13320	0.68	+0.7
2,541,463	+		LU632_RS13320	0.69	+0.5
2,541,463	+		LU632_RS13320	0.69	+1.2
2,541,464	-		LU632_RS13320	0.69	-2.2
2,541,470	-		LU632_RS13320	0.69	+1.8
2,541,470	-		LU632_RS13320	0.69	-2.0
2,541,470	-		LU632_RS13320	0.69	-0.5
2,541,512	+		LU632_RS13320	0.71	+0.0
2,541,513	-		LU632_RS13320	0.71	+2.2
2,541,548	+		LU632_RS13320	0.73	+0.1
2,541,548	+		LU632_RS13320	0.73	-0.1
2,541,548	+		LU632_RS13320	0.73	+1.8
2,541,549	-		LU632_RS13320	0.73	+1.4
2,541,549	-		LU632_RS13320	0.73	-0.6
2,541,549	-		LU632_RS13320	0.73	+2.0
2,541,552	-		LU632_RS13320	0.73	+0.2
2,541,671	+		LU632_RS13320	0.79	+0.2
2,541,672	-		LU632_RS13320	0.79	+0.1
2,541,672	-		LU632_RS13320	0.79	+0.1
2,541,691	-		LU632_RS13320	0.80	-0.5
2,541,691	-		LU632_RS13320	0.80	+0.3
2,541,731	+		LU632_RS13320	0.81	-1.2
2,541,732	-		LU632_RS13320	0.81	+0.6
2,541,798	+		LU632_RS13320	0.85	-1.6
2,541,818	+		LU632_RS13320	0.86	+0.3
2,541,819	-		LU632_RS13320	0.86	-1.1
2,541,827	+		LU632_RS13320	0.86	-0.8
2,542,041	-				-0.1
2,542,043	+				-1.3
2,542,044	-				-1.0
2,542,078	-				+0.0
2,542,148	+				-2.0
2,542,215	+				+0.6
2,542,216	-				+0.2
2,542,237	+				-1.8
2,542,339	+		LU632_RS13325	0.15	+0.3
2,542,353	-		LU632_RS13325	0.17	-0.1
2,542,391	-		LU632_RS13325	0.23	-0.4
2,542,547	+		LU632_RS13325	0.47	+0.9
2,542,547	+		LU632_RS13325	0.47	+1.6
2,542,547	+		LU632_RS13325	0.47	-2.1
2,542,548	-		LU632_RS13325	0.47	-0.7
2,542,670	+		LU632_RS13325	0.65	-0.1
2,542,671	-		LU632_RS13325	0.66	-1.7
2,542,671	-		LU632_RS13325	0.66	+1.8
2,542,673	-		LU632_RS13325	0.66	-2.9
2,542,676	+		LU632_RS13325	0.66	-2.1
2,542,735	+		LU632_RS13325	0.75	-0.8
2,542,736	-		LU632_RS13325	0.76	-1.0
2,542,736	-		LU632_RS13325	0.76	-0.7
2,542,739	+		LU632_RS13325	0.76	+0.7
2,542,739	+		LU632_RS13325	0.76	+1.3
2,542,902	+				+0.6
2,542,930	+				+0.5
2,542,930	+				+1.6
2,542,931	-				-0.8
2,542,993	+				+1.0
2,542,994	-				+0.7
2,542,996	+				-1.8
2,542,997	-				-2.5
2,543,014	-				-0.1
2,543,015	+				+0.2
2,543,016	-				+0.5
2,543,016	-				-2.6
2,543,016	-				-0.5
2,543,016	-				+0.4
2,543,019	+				+0.6
2,543,020	-				+1.0
2,543,020	-				-0.3