Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12970

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
2,471,985	+				+0.6
2,472,057	-				+1.2
2,472,111	+				+0.7
2,472,123	+				+1.7
2,472,124	-				+0.6
2,472,125	+				-0.5
2,472,135	+				-1.5
2,472,139	-				-1.9
2,472,226	+				+1.2
2,472,226	+				-0.8
2,472,226	+				+0.7
2,472,295	+		LU632_RS12965	0.14	-1.9
2,472,346	-		LU632_RS12965	0.23	-2.5
2,472,425	+		LU632_RS12965	0.37	+0.2
2,472,425	+		LU632_RS12965	0.37	+0.6
2,472,446	+		LU632_RS12965	0.41	+1.2
2,472,586	-		LU632_RS12965	0.66	-2.5
2,472,630	-		LU632_RS12965	0.74	-3.0
2,472,630	-		LU632_RS12965	0.74	+0.1
2,472,645	+		LU632_RS12965	0.77	+0.8
2,472,671	+		LU632_RS12965	0.82	-0.2
2,472,671	+		LU632_RS12965	0.82	+0.2
2,472,770	+				+1.4
2,472,770	+				+1.2
2,472,771	-				+1.4
2,472,771	-				-2.7
2,472,927	+				+0.2
2,472,927	+				+0.5
2,472,927	+				-1.4
2,472,928	-				-0.3
2,472,928	-				+1.1
2,472,939	-				-0.7
2,472,950	-				+0.0
2,473,045	-				-1.2
2,473,082	+				+1.1
2,473,083	-				-0.2
2,473,156	+	sppA	LU632_RS12970	0.11	-1.7
2,473,157	-	sppA	LU632_RS12970	0.11	+0.5
2,473,286	-	sppA	LU632_RS12970	0.18	+1.9
2,473,346	+	sppA	LU632_RS12970	0.21	+1.1
2,473,347	-	sppA	LU632_RS12970	0.21	-0.3
2,473,347	-	sppA	LU632_RS12970	0.21	-1.2
2,473,363	-	sppA	LU632_RS12970	0.22	-0.9
2,473,408	+	sppA	LU632_RS12970	0.25	+1.1
2,473,409	-	sppA	LU632_RS12970	0.25	+2.1
2,473,413	-	sppA	LU632_RS12970	0.25	+1.3
2,473,413	-	sppA	LU632_RS12970	0.25	-0.2
2,473,428	-	sppA	LU632_RS12970	0.26	+1.7
2,473,428	-	sppA	LU632_RS12970	0.26	+0.7
2,473,428	-	sppA	LU632_RS12970	0.26	-0.7
2,473,428	-	sppA	LU632_RS12970	0.26	+0.8
2,473,430	+	sppA	LU632_RS12970	0.26	+1.4
2,473,430	+	sppA	LU632_RS12970	0.26	-0.3
2,473,431	-	sppA	LU632_RS12970	0.26	+1.5
2,473,554	+	sppA	LU632_RS12970	0.33	-2.5
2,473,571	+	sppA	LU632_RS12970	0.33	+5.0
2,473,573	+	sppA	LU632_RS12970	0.34	-1.2
2,473,606	+	sppA	LU632_RS12970	0.35	+1.4
2,473,606	+	sppA	LU632_RS12970	0.35	+1.0
2,473,606	+	sppA	LU632_RS12970	0.35	+2.0
2,473,606	+	sppA	LU632_RS12970	0.35	+0.7
2,473,607	-	sppA	LU632_RS12970	0.35	+0.3
2,473,607	-	sppA	LU632_RS12970	0.35	+0.4
2,473,607	-	sppA	LU632_RS12970	0.35	-1.2
2,473,664	+	sppA	LU632_RS12970	0.38	-1.1
2,473,672	+	sppA	LU632_RS12970	0.39	+1.1
2,473,731	+	sppA	LU632_RS12970	0.42	-1.2
2,473,772	+	sppA	LU632_RS12970	0.44	-1.5
2,473,773	-	sppA	LU632_RS12970	0.44	+1.1
2,473,778	-	sppA	LU632_RS12970	0.45	-0.8
2,473,890	-	sppA	LU632_RS12970	0.51	+0.6
2,473,890	-	sppA	LU632_RS12970	0.51	+1.1
2,473,890	-	sppA	LU632_RS12970	0.51	-1.5
2,473,930	+	sppA	LU632_RS12970	0.53	-0.1
2,473,930	+	sppA	LU632_RS12970	0.53	-0.1
2,473,931	-	sppA	LU632_RS12970	0.53	-0.8
2,473,940	-	sppA	LU632_RS12970	0.53	+0.5
2,473,941	+	sppA	LU632_RS12970	0.53	+0.9
2,474,207	+	sppA	LU632_RS12970	0.68	+1.5
2,474,208	-	sppA	LU632_RS12970	0.68	-0.8
2,474,212	+	sppA	LU632_RS12970	0.68	+0.7
2,474,212	+	sppA	LU632_RS12970	0.68	-2.0
2,474,213	-	sppA	LU632_RS12970	0.68	-0.7
2,474,313	+	sppA	LU632_RS12970	0.73	+0.9
2,474,318	-	sppA	LU632_RS12970	0.74	+0.2
2,474,318	-	sppA	LU632_RS12970	0.74	+1.1
2,474,404	+	sppA	LU632_RS12970	0.78	+2.4
2,474,467	-	sppA	LU632_RS12970	0.82	-0.9
2,474,552	-	sppA	LU632_RS12970	0.86	-1.8
2,474,804	+				+0.4
2,474,848	+				-0.1
2,474,890	+				+1.4
2,474,894	+				+0.2
2,474,894	+				-1.0
2,474,894	+				+1.7
2,474,904	-				-0.7
2,474,904	-				+0.1
2,474,945	+				-2.8
2,474,945	+				-1.4
2,474,946	-				+0.5
2,474,947	+				-1.9
2,474,947	+				-0.4
2,474,947	+				-1.0
2,474,983	+	ansA	LU632_RS12975	0.11	+0.1
2,475,184	+	ansA	LU632_RS12975	0.30	+0.1
2,475,185	-	ansA	LU632_RS12975	0.30	-2.7
2,475,334	+	ansA	LU632_RS12975	0.45	+0.2
2,475,334	+	ansA	LU632_RS12975	0.45	+0.6
2,475,334	+	ansA	LU632_RS12975	0.45	+2.8
2,475,427	+	ansA	LU632_RS12975	0.54	+0.6
2,475,428	-	ansA	LU632_RS12975	0.54	+0.1
2,475,428	-	ansA	LU632_RS12975	0.54	-0.0
2,475,520	-	ansA	LU632_RS12975	0.63	+1.2
2,475,520	-	ansA	LU632_RS12975	0.63	-0.5
2,475,520	-	ansA	LU632_RS12975	0.63	+1.4
2,475,611	-	ansA	LU632_RS12975	0.72	+0.9
2,475,645	+	ansA	LU632_RS12975	0.76	+1.0
2,475,672	+	ansA	LU632_RS12975	0.78	-0.6
2,475,676	+	ansA	LU632_RS12975	0.79	+0.2
2,475,677	-	ansA	LU632_RS12975	0.79	+0.8
2,475,677	-	ansA	LU632_RS12975	0.79	+1.8
2,475,709	-	ansA	LU632_RS12975	0.82	+1.9
2,475,712	+	ansA	LU632_RS12975	0.82	+0.5
2,475,713	-	ansA	LU632_RS12975	0.82	-0.6
2,475,713	-	ansA	LU632_RS12975	0.82	+1.1
2,475,772	+	ansA	LU632_RS12975	0.88	+0.1