Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09885

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
1,885,593	-				-1.7
1,885,596	+				-0.8
1,885,600	+				+1.4
1,885,601	-				-0.5
1,885,646	+				-1.3
1,885,766	-				-1.9
1,885,789	-				+0.1
1,885,790	+				+0.4
1,885,790	+				-1.8
1,885,791	-				-2.1
1,885,791	-				+0.2
1,885,791	-				-1.4
1,885,791	-				+1.1
1,885,791	-				-0.3
1,885,991	+	ldtD	LU632_RS09885	0.15	-0.5
1,886,041	+	ldtD	LU632_RS09885	0.18	-1.8
1,886,119	+	ldtD	LU632_RS09885	0.22	+0.2
1,886,120	-	ldtD	LU632_RS09885	0.22	-0.4
1,886,124	+	ldtD	LU632_RS09885	0.22	-0.8
1,886,124	+	ldtD	LU632_RS09885	0.22	-0.8
1,886,124	+	ldtD	LU632_RS09885	0.22	+0.7
1,886,125	-	ldtD	LU632_RS09885	0.22	-0.5
1,886,125	-	ldtD	LU632_RS09885	0.22	-1.7
1,886,125	-	ldtD	LU632_RS09885	0.22	+2.5
1,886,125	-	ldtD	LU632_RS09885	0.22	-0.5
1,886,126	+	ldtD	LU632_RS09885	0.23	-0.0
1,886,179	-	ldtD	LU632_RS09885	0.26	+0.8
1,886,738	+	ldtD	LU632_RS09885	0.58	+1.4
1,886,773	-	ldtD	LU632_RS09885	0.60	+2.4
1,886,784	+	ldtD	LU632_RS09885	0.60	+0.0
1,886,918	-	ldtD	LU632_RS09885	0.68	+1.4
1,886,930	+	ldtD	LU632_RS09885	0.69	-1.4
1,886,977	-	ldtD	LU632_RS09885	0.71	-1.2
1,887,122	+	ldtD	LU632_RS09885	0.80	+1.3
1,887,144	+	ldtD	LU632_RS09885	0.81	-2.0
1,887,145	-	ldtD	LU632_RS09885	0.81	-0.8
1,887,197	-	ldtD	LU632_RS09885	0.84	-1.8
1,887,222	-	ldtD	LU632_RS09885	0.86	+4.2
1,887,247	+	ldtD	LU632_RS09885	0.87	-0.6
1,887,293	+	ldtD	LU632_RS09885	0.90	-1.1
1,887,294	-	ldtD	LU632_RS09885	0.90	-0.5
1,887,312	+				-2.9
1,887,312	+				-1.5
1,887,313	-				+3.7
1,887,313	-				+1.8
1,887,314	+				-1.8
1,887,314	+				-0.1
1,887,314	+				-0.8
1,887,314	+				-0.5
1,887,314	+				+0.7
1,887,314	+				+0.8
1,887,315	-				+0.6
1,887,315	-				-1.1
1,887,348	+				-2.2
1,887,352	-				-3.5
1,887,352	-				+5.1
1,887,417	-				-0.5
1,887,480	-				-2.1
1,887,480	-				+0.3
1,887,494	-				+0.8
1,887,494	-				-1.8
1,887,499	-				+0.9
1,887,536	+				+0.3
1,887,536	+				-0.1
1,887,536	+				-0.3
1,887,546	+				+0.2
1,887,641	+				-0.1
1,887,659	+				+0.4
1,887,778	+		LU632_RS09890	0.21	-0.9
1,887,785	-		LU632_RS09890	0.23	+0.1
1,887,922	+		LU632_RS09890	0.48	+0.2
1,887,922	+		LU632_RS09890	0.48	+1.8
1,887,923	-		LU632_RS09890	0.48	+0.3
1,887,923	-		LU632_RS09890	0.48	+0.4
1,887,923	-		LU632_RS09890	0.48	+0.2
1,888,053	+		LU632_RS09890	0.72	+0.5
1,888,054	-		LU632_RS09890	0.72	-0.4
1,888,054	-		LU632_RS09890	0.72	+0.3
1,888,058	+		LU632_RS09890	0.72	+0.6
1,888,058	+		LU632_RS09890	0.72	+1.2
1,888,152	+		LU632_RS09890	0.90	-1.2
1,888,178	+				+0.3
1,888,179	-				+0.8
1,888,236	+				+2.4
1,888,246	+				+1.9
1,888,246	+				+0.1
1,888,246	+				+0.6
1,888,247	-				-0.4
1,888,247	-				+0.2
1,888,317	+		LU632_RS09895	0.11	-2.0
1,888,318	-		LU632_RS09895	0.11	+1.5
1,888,349	-		LU632_RS09895	0.16	+1.1
1,888,392	+		LU632_RS09895	0.23	-1.5
1,888,393	-		LU632_RS09895	0.23	+1.5
1,888,423	-		LU632_RS09895	0.28	+3.7
1,888,423	-		LU632_RS09895	0.28	-0.5