Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07085

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
1,342,417	+				+0.6
1,342,607	+		LU632_RS07075	0.21	-1.0
1,342,625	+		LU632_RS07075	0.27	+0.4
1,342,625	+		LU632_RS07075	0.27	+0.8
1,342,625	+		LU632_RS07075	0.27	+1.2
1,342,625	+		LU632_RS07075	0.27	+1.1
1,342,625	+		LU632_RS07075	0.27	-0.5
1,342,627	+		LU632_RS07075	0.28	-1.0
1,342,628	-		LU632_RS07075	0.28	-2.0
1,342,628	-		LU632_RS07075	0.28	+1.0
1,342,748	-		LU632_RS07075	0.67	+0.2
1,342,748	-		LU632_RS07075	0.67	-0.3
1,342,748	-		LU632_RS07075	0.67	+1.1
1,342,751	+		LU632_RS07075	0.68	-1.6
1,342,752	-		LU632_RS07075	0.68	-2.4
1,342,755	-		LU632_RS07075	0.69	-1.5
1,342,755	-		LU632_RS07075	0.69	+1.6
1,342,755	-		LU632_RS07075	0.69	+2.5
1,342,890	+				-1.3
1,342,890	+				-1.2
1,342,891	-				+1.2
1,342,891	-				-0.2
1,342,891	-				+1.9
1,342,891	-				-0.7
1,342,891	-				+1.4
1,342,975	-		LU632_RS07080	0.17	-0.3
1,342,991	-		LU632_RS07080	0.20	-1.6
1,342,991	-		LU632_RS07080	0.20	-0.7
1,342,994	+		LU632_RS07080	0.21	-1.0
1,343,123	-		LU632_RS07080	0.47	+0.5
1,343,123	-		LU632_RS07080	0.47	+3.1
1,343,123	-		LU632_RS07080	0.47	-0.2
1,343,252	+		LU632_RS07080	0.74	+1.4
1,343,276	+		LU632_RS07080	0.79	+0.8
1,343,278	+		LU632_RS07080	0.79	+1.5
1,343,278	+		LU632_RS07080	0.79	-0.7
1,343,278	+		LU632_RS07080	0.79	-0.1
1,343,278	+		LU632_RS07080	0.79	+0.1
1,343,279	-		LU632_RS07080	0.79	-2.3
1,343,279	-		LU632_RS07080	0.79	-0.2
1,343,286	+		LU632_RS07080	0.81	+3.4
1,343,318	+		LU632_RS07080	0.87	-1.9
1,343,353	-				+0.3
1,343,354	+				+2.6
1,343,355	-				-0.5
1,343,355	-				-0.1
1,343,382	+				+2.3
1,343,382	+				-1.3
1,343,407	+				+3.3
1,343,438	+		LU632_RS07085	0.15	-1.3
1,343,439	-		LU632_RS07085	0.15	-0.5
1,343,439	-		LU632_RS07085	0.15	-0.4
1,343,439	-		LU632_RS07085	0.15	-0.5
1,343,439	-		LU632_RS07085	0.15	+0.3
1,343,439	-		LU632_RS07085	0.15	-0.8
1,343,480	-		LU632_RS07085	0.25	+4.6
1,343,532	-		LU632_RS07085	0.37	-1.5
1,343,532	-		LU632_RS07085	0.37	-1.2
1,343,694	-		LU632_RS07085	0.75	-0.8
1,343,729	+		LU632_RS07085	0.83	-1.1
1,343,729	+		LU632_RS07085	0.83	-1.7
1,343,729	+		LU632_RS07085	0.83	-0.0
1,343,729	+		LU632_RS07085	0.83	+0.8
1,343,730	-		LU632_RS07085	0.83	+1.3
1,343,730	-		LU632_RS07085	0.83	+1.0
1,343,730	-		LU632_RS07085	0.83	+0.3
1,343,730	-		LU632_RS07085	0.83	-1.1
1,343,869	+				-0.3
1,343,873	+				-1.3
1,343,873	+				-0.4
1,343,874	-				-0.7
1,343,874	-				+0.3
1,343,974	+				-1.3
1,344,146	-		LU632_RS07090	0.77	-1.7
1,344,206	-				+0.0
1,344,230	-				+0.3
1,344,271	-				-0.6
1,344,271	-				-2.9
1,344,272	+				-0.5
1,344,273	-				+1.3
1,344,440	-		LU632_RS07095	0.17	-2.5
1,344,440	-		LU632_RS07095	0.17	-1.9
1,344,449	+		LU632_RS07095	0.18	-2.2
1,344,449	+		LU632_RS07095	0.18	-0.0
1,344,449	+		LU632_RS07095	0.18	+0.6
1,344,449	+		LU632_RS07095	0.18	+0.4
1,344,449	+		LU632_RS07095	0.18	-0.2
1,344,450	-		LU632_RS07095	0.19	+2.2
1,344,450	-		LU632_RS07095	0.19	-2.3
1,344,451	+		LU632_RS07095	0.19	+0.1
1,344,451	+		LU632_RS07095	0.19	-0.6
1,344,451	+		LU632_RS07095	0.19	-0.8
1,344,451	+		LU632_RS07095	0.19	-0.3
1,344,452	-		LU632_RS07095	0.19	-2.2
1,344,452	-		LU632_RS07095	0.19	+0.3
1,344,532	+		LU632_RS07095	0.30	+0.8
1,344,532	+		LU632_RS07095	0.30	+1.9
1,344,533	-		LU632_RS07095	0.30	-0.7
1,344,533	-		LU632_RS07095	0.30	+1.0
1,344,562	+		LU632_RS07095	0.34	-0.5
1,344,562	+		LU632_RS07095	0.34	-2.3
1,344,562	+		LU632_RS07095	0.34	-1.8
1,344,563	-		LU632_RS07095	0.34	+0.4
1,344,627	+		LU632_RS07095	0.43	+2.2
1,344,627	+		LU632_RS07095	0.43	-1.6
1,344,628	-		LU632_RS07095	0.43	+1.3
1,344,629	-		LU632_RS07095	0.43	-1.7
1,344,720	+		LU632_RS07095	0.56	+0.6
1,344,774	+		LU632_RS07095	0.64	-1.2
1,344,778	+		LU632_RS07095	0.64	-1.3
1,344,778	+		LU632_RS07095	0.64	-4.0
1,344,778	+		LU632_RS07095	0.64	+0.9
1,344,778	+		LU632_RS07095	0.64	+1.0
1,344,792	+		LU632_RS07095	0.66	+0.9
1,344,792	+		LU632_RS07095	0.66	+1.5
1,344,793	-		LU632_RS07095	0.66	-1.7
1,344,793	-		LU632_RS07095	0.66	+3.7