Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06425

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
1,235,302	-	cysG	LU632_RS06420	0.36	-2.1
1,235,344	-	cysG	LU632_RS06420	0.39	+0.2
1,235,344	-	cysG	LU632_RS06420	0.39	-0.2
1,235,505	+	cysG	LU632_RS06420	0.50	-1.4
1,235,707	-	cysG	LU632_RS06420	0.64	+0.5
1,235,733	-	cysG	LU632_RS06420	0.66	+5.1
1,235,755	-	cysG	LU632_RS06420	0.68	+5.1
1,235,807	-	cysG	LU632_RS06420	0.71	-1.5
1,235,935	+	cysG	LU632_RS06420	0.81	-2.5
1,235,935	+	cysG	LU632_RS06420	0.81	-0.0
1,235,935	+	cysG	LU632_RS06420	0.81	+0.9
1,235,935	+	cysG	LU632_RS06420	0.81	-0.2
1,236,108	+				+2.5
1,236,108	+				-1.2
1,236,109	-				-0.5
1,236,109	-				-0.1
1,236,109	-				-2.0
1,236,267	+				-2.4
1,236,267	+				-1.5
1,236,268	-				+1.5
1,236,273	+				-0.7
1,236,319	+	cysD	LU632_RS06425	0.11	+3.1
1,236,320	-	cysD	LU632_RS06425	0.11	+0.8
1,236,320	-	cysD	LU632_RS06425	0.11	-0.7
1,236,363	+	cysD	LU632_RS06425	0.16	+1.9
1,236,363	+	cysD	LU632_RS06425	0.16	+0.9
1,236,401	+	cysD	LU632_RS06425	0.20	-1.1
1,236,402	-	cysD	LU632_RS06425	0.20	-1.8
1,236,402	-	cysD	LU632_RS06425	0.20	+1.0
1,236,402	-	cysD	LU632_RS06425	0.20	-0.9
1,236,559	-	cysD	LU632_RS06425	0.37	-0.1
1,236,595	+	cysD	LU632_RS06425	0.41	+2.5
1,236,664	+	cysD	LU632_RS06425	0.49	+0.2
1,236,726	+	cysD	LU632_RS06425	0.56	-2.2
1,236,727	-	cysD	LU632_RS06425	0.56	+1.1
1,236,730	+	cysD	LU632_RS06425	0.56	-0.9
1,236,730	+	cysD	LU632_RS06425	0.56	-1.6
1,236,730	+	cysD	LU632_RS06425	0.56	+1.9
1,236,730	+	cysD	LU632_RS06425	0.56	-0.1
1,236,730	+	cysD	LU632_RS06425	0.56	+0.0
1,236,731	-	cysD	LU632_RS06425	0.56	-0.4
1,236,731	-	cysD	LU632_RS06425	0.56	-1.0
1,236,731	-	cysD	LU632_RS06425	0.56	-0.6
1,236,748	-	cysD	LU632_RS06425	0.58	+0.6
1,236,825	+	cysD	LU632_RS06425	0.67	-0.0
1,236,844	+	cysD	LU632_RS06425	0.69	+0.8
1,237,143	+				-2.0
1,237,150	-				-1.7
1,237,260	+				+1.9
1,237,280	+				+2.0
1,237,336	-	cysN	LU632_RS06430	0.14	-1.8
1,237,416	+	cysN	LU632_RS06430	0.19	+1.5
1,237,417	-	cysN	LU632_RS06430	0.20	-1.6
1,237,439	-	cysN	LU632_RS06430	0.21	+1.6
1,237,458	+	cysN	LU632_RS06430	0.22	-1.3
1,237,464	+	cysN	LU632_RS06430	0.23	-2.2
1,237,495	+	cysN	LU632_RS06430	0.25	-1.6
1,237,495	-	cysN	LU632_RS06430	0.25	+2.2
1,237,496	-	cysN	LU632_RS06430	0.25	+0.9
1,237,496	-	cysN	LU632_RS06430	0.25	+0.8
1,237,498	-	cysN	LU632_RS06430	0.25	+1.9
1,237,597	-	cysN	LU632_RS06430	0.32	+0.6
1,237,597	-	cysN	LU632_RS06430	0.32	+0.8
1,237,617	+	cysN	LU632_RS06430	0.34	+0.8
1,237,617	+	cysN	LU632_RS06430	0.34	+2.3
1,237,618	-	cysN	LU632_RS06430	0.34	+2.3
1,237,734	+	cysN	LU632_RS06430	0.42	+0.9
1,237,735	-	cysN	LU632_RS06430	0.42	+1.7
1,237,804	+	cysN	LU632_RS06430	0.47	+3.7
1,237,804	+	cysN	LU632_RS06430	0.47	-1.1
1,237,804	+	cysN	LU632_RS06430	0.47	+1.6
1,237,805	-	cysN	LU632_RS06430	0.47	-0.5
1,237,891	+	cysN	LU632_RS06430	0.53	-2.6
1,237,891	+	cysN	LU632_RS06430	0.53	+0.4
1,237,891	+	cysN	LU632_RS06430	0.53	+2.0
1,237,891	+	cysN	LU632_RS06430	0.53	-1.0
1,237,891	+	cysN	LU632_RS06430	0.53	+1.5
1,237,892	-	cysN	LU632_RS06430	0.53	+0.3
1,237,980	-	cysN	LU632_RS06430	0.59	-1.2
1,238,069	+	cysN	LU632_RS06430	0.65	+0.5