Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05300

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS05290 and LU632_RS05295 are separated by 11 nucleotidesLU632_RS05295 and LU632_RS05300 overlap by 10 nucleotidesLU632_RS05300 and LU632_RS05305 are separated by 37 nucleotidesLU632_RS05305 and LU632_RS05310 are separated by 436 nucleotides LU632_RS05290: LU632_RS05290 - TIGR03756 family integrating conjugative element protein, at 1,022,609 to 1,023,580 _RS05290 LU632_RS05295: LU632_RS05295 - integrating conjugative element protein, at 1,023,592 to 1,023,936 _RS05295 LU632_RS05300: LU632_RS05300 - conjugal transfer protein TraG N-terminal domain-containing protein, at 1,023,927 to 1,024,550 _RS05300 LU632_RS05305: LU632_RS05305 - hypothetical protein, at 1,024,588 to 1,024,875 _RS05305 LU632_RS05310: LU632_RS05310 - hypothetical protein, at 1,025,312 to 1,026,292 _RS05310 Position (kb) 1023 1024 1025Strain fitness (log2 ratio) -2 -1 0 1 2at 1024.176 kb on - strand, within LU632_RS05300at 1024.273 kb on - strand, within LU632_RS05300at 1024.281 kb on - strand, within LU632_RS05300at 1024.356 kb on - strand, within LU632_RS05300at 1024.380 kb on + strand, within LU632_RS05300at 1024.380 kb on + strand, within LU632_RS05300at 1024.380 kb on + strand, within LU632_RS05300at 1024.380 kb on + strand, within LU632_RS05300at 1024.380 kb on + strand, within LU632_RS05300at 1024.381 kb on - strand, within LU632_RS05300at 1024.381 kb on - strand, within LU632_RS05300at 1024.381 kb on - strand, within LU632_RS05300at 1024.381 kb on - strand, within LU632_RS05300at 1024.381 kb on - strand, within LU632_RS05300at 1024.381 kb on - strand, within LU632_RS05300at 1024.381 kb on - strand, within LU632_RS05300at 1024.381 kb on - strand, within LU632_RS05300at 1024.381 kb on - strand, within LU632_RS05300at 1024.445 kb on - strand, within LU632_RS05300at 1024.517 kb on - strandat 1024.521 kb on - strandat 1024.521 kb on - strandat 1024.589 kb on + strandat 1024.608 kb on + strandat 1024.608 kb on + strandat 1024.611 kb on - strandat 1024.613 kb on + strandat 1024.614 kb on - strandat 1024.638 kb on + strand, within LU632_RS05305at 1024.639 kb on - strand, within LU632_RS05305at 1024.641 kb on - strand, within LU632_RS05305at 1024.665 kb on - strand, within LU632_RS05305at 1024.666 kb on + strand, within LU632_RS05305at 1024.666 kb on + strand, within LU632_RS05305at 1024.758 kb on + strand, within LU632_RS05305at 1024.759 kb on - strand, within LU632_RS05305at 1024.773 kb on + strand, within LU632_RS05305at 1024.773 kb on + strand, within LU632_RS05305at 1024.774 kb on - strand, within LU632_RS05305at 1024.774 kb on - strand, within LU632_RS05305at 1024.896 kb on - strandat 1024.896 kb on - strandat 1024.920 kb on - strandat 1025.007 kb on + strandat 1025.008 kb on - strandat 1025.008 kb on - strandat 1025.144 kb on + strandat 1025.159 kb on + strandat 1025.171 kb on + strandat 1025.217 kb on + strandat 1025.308 kb on - strandat 1025.311 kb on + strandat 1025.461 kb on + strand, within LU632_RS05310at 1025.502 kb on + strand, within LU632_RS05310

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
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1,024,176 - LU632_RS05300 0.40 +2.5
1,024,273 - LU632_RS05300 0.55 -0.5
1,024,281 - LU632_RS05300 0.57 +1.1
1,024,356 - LU632_RS05300 0.69 +1.1
1,024,380 + LU632_RS05300 0.73 -1.6
1,024,380 + LU632_RS05300 0.73 +0.3
1,024,380 + LU632_RS05300 0.73 -1.1
1,024,380 + LU632_RS05300 0.73 -1.3
1,024,380 + LU632_RS05300 0.73 +0.1
1,024,381 - LU632_RS05300 0.73 -1.4
1,024,381 - LU632_RS05300 0.73 +0.7
1,024,381 - LU632_RS05300 0.73 +1.2
1,024,381 - LU632_RS05300 0.73 +0.1
1,024,381 - LU632_RS05300 0.73 +0.7
1,024,381 - LU632_RS05300 0.73 +1.2
1,024,381 - LU632_RS05300 0.73 +1.6
1,024,381 - LU632_RS05300 0.73 +1.2
1,024,381 - LU632_RS05300 0.73 +0.9
1,024,445 - LU632_RS05300 0.83 -0.9
1,024,517 - +0.2
1,024,521 - -0.1
1,024,521 - +0.1
1,024,589 + +0.8
1,024,608 + -1.6
1,024,608 + -1.9
1,024,611 - +1.5
1,024,613 + +0.8
1,024,614 - +0.3
1,024,638 + LU632_RS05305 0.17 -0.5
1,024,639 - LU632_RS05305 0.18 -2.4
1,024,641 - LU632_RS05305 0.18 +0.1
1,024,665 - LU632_RS05305 0.27 +0.1
1,024,666 + LU632_RS05305 0.27 -0.4
1,024,666 + LU632_RS05305 0.27 +0.8
1,024,758 + LU632_RS05305 0.59 +2.2
1,024,759 - LU632_RS05305 0.59 +0.8
1,024,773 + LU632_RS05305 0.64 +1.3
1,024,773 + LU632_RS05305 0.64 -0.8
1,024,774 - LU632_RS05305 0.65 +0.3
1,024,774 - LU632_RS05305 0.65 -0.4
1,024,896 - +2.3
1,024,896 - +0.6
1,024,920 - -0.1
1,025,007 + +1.4
1,025,008 - +1.0
1,025,008 - -0.4
1,025,144 + -1.1
1,025,159 + -1.2
1,025,171 + +1.0
1,025,217 + -0.5
1,025,308 - -1.4
1,025,311 + +1.1
1,025,461 + LU632_RS05310 0.15 -0.3
1,025,502 + LU632_RS05310 0.19 -0.2

Or see this region's nucleotide sequence