Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04415 and LU632_RS04420 are separated by 134 nucleotides LU632_RS04420 and LU632_RS04425 are separated by 571 nucleotides LU632_RS04425 and LU632_RS04430 overlap by 4 nucleotides LU632_RS04430 and LU632_RS04435 are separated by 215 nucleotides
LU632_RS04415: LU632_RS04415 - IS91 family transposase, at 872,353 to 873,576
_RS04415
LU632_RS04420: LU632_RS04420 - hypothetical protein, at 873,711 to 873,869
_RS04420
LU632_RS04425: LU632_RS04425 - DNA-binding protein, at 874,441 to 874,797
_RS04425
LU632_RS04430: LU632_RS04430 - type II toxin-antitoxin system RelE/ParE family toxin, at 874,794 to 875,129
_RS04430
LU632_RS04435: LU632_RS04435 - recombinase family protein, at 875,345 to 875,977
_RS04435
Position (kb) 874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 874.095 kb on + strand at 874.247 kb on - strand at 874.321 kb on + strand at 874.321 kb on + strand at 874.545 kb on + strand, within LU632_RS04425 at 874.546 kb on - strand, within LU632_RS04425 at 874.607 kb on - strand, within LU632_RS04425 at 874.607 kb on - strand, within LU632_RS04425 at 875.301 kb on - strand at 875.384 kb on + strand at 875.385 kb on - strand at 875.440 kb on + strand, within LU632_RS04435 at 875.440 kb on + strand, within LU632_RS04435 at 875.441 kb on - strand, within LU632_RS04435 at 875.473 kb on + strand, within LU632_RS04435 at 875.473 kb on + strand, within LU632_RS04435 at 875.474 kb on - strand, within LU632_RS04435 at 875.474 kb on - strand, within LU632_RS04435 at 875.474 kb on - strand, within LU632_RS04435 at 875.477 kb on + strand, within LU632_RS04435 at 875.477 kb on + strand, within LU632_RS04435 at 875.478 kb on - strand, within LU632_RS04435 at 875.480 kb on + strand, within LU632_RS04435 at 875.481 kb on - strand, within LU632_RS04435 at 875.481 kb on - strand, within LU632_RS04435 at 875.481 kb on - strand, within LU632_RS04435 at 875.482 kb on + strand, within LU632_RS04435 at 875.483 kb on - strand, within LU632_RS04435 at 875.483 kb on - strand, within LU632_RS04435 at 875.631 kb on + strand, within LU632_RS04435 at 875.713 kb on + strand, within LU632_RS04435 at 875.729 kb on - strand, within LU632_RS04435 at 875.734 kb on + strand, within LU632_RS04435 at 875.734 kb on + strand, within LU632_RS04435
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:PE, population C11, passage 1 (PE-S-C11-P1) remove 874,095 + -0.4 874,247 - -1.0 874,321 + -0.1 874,321 + +2.3 874,545 + LU632_RS04425 0.29 -3.5 874,546 - LU632_RS04425 0.29 +0.6 874,607 - LU632_RS04425 0.46 -0.6 874,607 - LU632_RS04425 0.46 -0.7 875,301 - +2.0 875,384 + +0.1 875,385 - -1.3 875,440 + LU632_RS04435 0.15 -2.5 875,440 + LU632_RS04435 0.15 -0.0 875,441 - LU632_RS04435 0.15 +1.9 875,473 + LU632_RS04435 0.20 -0.3 875,473 + LU632_RS04435 0.20 +1.1 875,474 - LU632_RS04435 0.20 -1.4 875,474 - LU632_RS04435 0.20 -1.6 875,474 - LU632_RS04435 0.20 -2.1 875,477 + LU632_RS04435 0.21 -2.3 875,477 + LU632_RS04435 0.21 +1.9 875,478 - LU632_RS04435 0.21 +0.0 875,480 + LU632_RS04435 0.21 -0.1 875,481 - LU632_RS04435 0.21 -0.6 875,481 - LU632_RS04435 0.21 -0.1 875,481 - LU632_RS04435 0.21 -3.0 875,482 + LU632_RS04435 0.22 +0.7 875,483 - LU632_RS04435 0.22 -1.9 875,483 - LU632_RS04435 0.22 -1.0 875,631 + LU632_RS04435 0.45 +2.3 875,713 + LU632_RS04435 0.58 -0.3 875,729 - LU632_RS04435 0.61 -3.3 875,734 + LU632_RS04435 0.61 -0.2 875,734 + LU632_RS04435 0.61 -3.3
Or see this region's nucleotide sequence