Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04350 and LU632_RS04355 are separated by 446 nucleotides LU632_RS04355 and LU632_RS04360 overlap by 11 nucleotides LU632_RS04360 and LU632_RS04365 are separated by 20 nucleotides LU632_RS04365 and LU632_RS04370 are separated by 608 nucleotides
LU632_RS04350: LU632_RS04350 - hypothetical protein, at 861,989 to 862,129
_RS04350
LU632_RS04355: LU632_RS04355 - IS6 family transposase, at 862,576 to 862,905
_RS04355
LU632_RS04360: LU632_RS04360 - VRR-NUC domain-containing protein, at 862,895 to 863,426
_RS04360
LU632_RS04365: LU632_RS04365 - IS5/IS1182 family transposase, at 863,447 to 863,548
_RS04365
LU632_RS04370: LU632_RS04370 - hypothetical protein, at 864,157 to 864,387
_RS04370
Position (kb) 862
863
864 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 861.959 kb on + strand at 861.989 kb on - strand at 862.023 kb on + strand, within LU632_RS04350 at 862.023 kb on + strand, within LU632_RS04350 at 862.024 kb on - strand, within LU632_RS04350 at 862.492 kb on + strand at 862.492 kb on + strand at 862.546 kb on + strand at 862.627 kb on - strand, within LU632_RS04355 at 862.628 kb on + strand, within LU632_RS04355 at 862.628 kb on + strand, within LU632_RS04355 at 862.628 kb on + strand, within LU632_RS04355 at 862.629 kb on - strand, within LU632_RS04355 at 862.641 kb on + strand, within LU632_RS04355 at 862.641 kb on + strand, within LU632_RS04355 at 862.641 kb on + strand, within LU632_RS04355 at 862.657 kb on + strand, within LU632_RS04355 at 862.748 kb on + strand, within LU632_RS04355 at 862.816 kb on + strand, within LU632_RS04355 at 862.843 kb on + strand, within LU632_RS04355 at 862.843 kb on + strand, within LU632_RS04355 at 862.844 kb on - strand, within LU632_RS04355 at 863.060 kb on + strand, within LU632_RS04360 at 863.077 kb on + strand, within LU632_RS04360 at 863.098 kb on + strand, within LU632_RS04360 at 863.098 kb on + strand, within LU632_RS04360 at 863.236 kb on + strand, within LU632_RS04360 at 863.236 kb on + strand, within LU632_RS04360 at 863.237 kb on - strand, within LU632_RS04360 at 863.237 kb on - strand, within LU632_RS04360 at 863.237 kb on - strand, within LU632_RS04360 at 863.288 kb on + strand, within LU632_RS04360 at 863.292 kb on + strand, within LU632_RS04360 at 863.423 kb on + strand at 863.424 kb on - strand at 863.480 kb on - strand, within LU632_RS04365 at 863.612 kb on + strand at 863.612 kb on + strand at 863.655 kb on - strand at 863.655 kb on - strand at 863.659 kb on - strand at 863.659 kb on - strand at 863.663 kb on + strand at 863.663 kb on + strand at 863.664 kb on - strand at 863.683 kb on - strand at 863.795 kb on + strand at 863.806 kb on + strand at 863.972 kb on - strand at 864.042 kb on - strand at 864.042 kb on - strand at 864.042 kb on - strand at 864.075 kb on + strand at 864.075 kb on + strand at 864.076 kb on - strand at 864.102 kb on - strand at 864.122 kb on + strand at 864.122 kb on + strand at 864.122 kb on + strand at 864.123 kb on - strand at 864.126 kb on + strand at 864.126 kb on + strand at 864.177 kb on + strand at 864.229 kb on - strand, within LU632_RS04370 at 864.252 kb on + strand, within LU632_RS04370 at 864.272 kb on + strand, within LU632_RS04370 at 864.342 kb on - strand, within LU632_RS04370 at 864.342 kb on - strand, within LU632_RS04370 at 864.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:PE, population C11, passage 1 (PE-S-C11-P1) remove 861,959 + -0.4 861,989 - -2.4 862,023 + LU632_RS04350 0.24 -2.1 862,023 + LU632_RS04350 0.24 +0.8 862,024 - LU632_RS04350 0.25 -0.1 862,492 + -0.1 862,492 + +0.2 862,546 + -0.4 862,627 - LU632_RS04355 0.15 +0.9 862,628 + LU632_RS04355 0.16 -1.6 862,628 + LU632_RS04355 0.16 -0.7 862,628 + LU632_RS04355 0.16 +1.4 862,629 - LU632_RS04355 0.16 +1.9 862,641 + LU632_RS04355 0.20 +1.0 862,641 + LU632_RS04355 0.20 -0.2 862,641 + LU632_RS04355 0.20 +1.3 862,657 + LU632_RS04355 0.25 -0.4 862,748 + LU632_RS04355 0.52 -0.8 862,816 + LU632_RS04355 0.73 -0.5 862,843 + LU632_RS04355 0.81 +1.0 862,843 + LU632_RS04355 0.81 +0.2 862,844 - LU632_RS04355 0.81 +0.5 863,060 + LU632_RS04360 0.31 +0.1 863,077 + LU632_RS04360 0.34 -1.5 863,098 + LU632_RS04360 0.38 -0.8 863,098 + LU632_RS04360 0.38 -1.7 863,236 + LU632_RS04360 0.64 +0.0 863,236 + LU632_RS04360 0.64 -0.9 863,237 - LU632_RS04360 0.64 -1.1 863,237 - LU632_RS04360 0.64 +0.6 863,237 - LU632_RS04360 0.64 +1.9 863,288 + LU632_RS04360 0.74 +2.9 863,292 + LU632_RS04360 0.75 +0.9 863,423 + +2.7 863,424 - -0.9 863,480 - LU632_RS04365 0.32 -1.8 863,612 + +0.2 863,612 + -1.4 863,655 - +0.1 863,655 - +0.6 863,659 - +1.5 863,659 - -0.6 863,663 + -2.2 863,663 + +0.7 863,664 - +0.8 863,683 - +1.6 863,795 + -0.1 863,806 + +1.0 863,972 - +1.6 864,042 - +2.7 864,042 - -1.8 864,042 - +0.3 864,075 + +0.6 864,075 + +0.4 864,076 - +0.5 864,102 - -1.3 864,122 + +0.6 864,122 + -1.2 864,122 + +4.0 864,123 - +0.4 864,126 + +2.2 864,126 + +1.3 864,177 + -1.1 864,229 - LU632_RS04370 0.31 +1.8 864,252 + LU632_RS04370 0.41 +0.6 864,272 + LU632_RS04370 0.50 -0.5 864,342 - LU632_RS04370 0.80 +0.3 864,342 - LU632_RS04370 0.80 -2.3 864,415 - +0.7
Or see this region's nucleotide sequence