Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03080

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpdhR and aceE are separated by 158 nucleotidesaceE and aceF are separated by 14 nucleotides LU632_RS03075: pdhR - pyruvate dehydrogenase complex transcriptional repressor PdhR, at 627,079 to 627,843 pdhR LU632_RS03080: aceE - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 628,002 to 630,665 aceE LU632_RS03085: aceF - pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase, at 630,680 to 632,332 aceF Position (kb) 628 629 630 631Strain fitness (log2 ratio) -2 -1 0 1 2 3at 627.010 kb on + strandat 627.230 kb on + strand, within pdhRat 627.405 kb on + strand, within pdhRat 627.418 kb on + strand, within pdhRat 627.418 kb on + strand, within pdhRat 627.418 kb on + strand, within pdhRat 627.428 kb on + strand, within pdhRat 627.428 kb on + strand, within pdhRat 627.428 kb on + strand, within pdhRat 627.564 kb on + strand, within pdhRat 627.564 kb on + strand, within pdhRat 627.564 kb on + strand, within pdhRat 627.907 kb on + strandat 630.663 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
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627,010 + -1.0
627,230 + pdhR LU632_RS03075 0.20 -0.5
627,405 + pdhR LU632_RS03075 0.43 +1.6
627,418 + pdhR LU632_RS03075 0.44 +1.6
627,418 + pdhR LU632_RS03075 0.44 -2.3
627,418 + pdhR LU632_RS03075 0.44 -0.3
627,428 + pdhR LU632_RS03075 0.46 -1.9
627,428 + pdhR LU632_RS03075 0.46 -0.8
627,428 + pdhR LU632_RS03075 0.46 +1.2
627,564 + pdhR LU632_RS03075 0.63 +3.5
627,564 + pdhR LU632_RS03075 0.63 +0.2
627,564 + pdhR LU632_RS03075 0.63 +0.9
627,907 + -1.0
630,663 + -2.7

Or see this region's nucleotide sequence