Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaQ and LU632_RS01100 are separated by 122 nucleotides LU632_RS01100 and mtnC are separated by 475 nucleotides mtnC and LU632_RS01110 overlap by 29 nucleotides LU632_RS01110 and mtnA are separated by 256 nucleotides
LU632_RS01095: dnaQ - DNA polymerase III subunit epsilon, at 235,114 to 235,848
dnaQ
LU632_RS01100: LU632_RS01100 - tRNA-Asp, at 235,971 to 236,047
_RS01100
LU632_RS01105: mtnC - acireductone synthase, at 236,523 to 236,964
mtnC
LU632_RS01110: LU632_RS01110 - acireductone dioxygenase, at 236,936 to 237,407
_RS01110
LU632_RS01115: mtnA - S-methyl-5-thioribose-1-phosphate isomerase, at 237,664 to 238,695
mtnA
Position (kb) 236
237 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 235.850 kb on + strand at 235.851 kb on - strand at 235.889 kb on + strand at 235.889 kb on + strand at 235.890 kb on - strand at 235.938 kb on - strand at 236.109 kb on + strand at 236.110 kb on - strand at 236.110 kb on - strand at 236.158 kb on + strand at 236.291 kb on - strand at 236.359 kb on + strand at 236.360 kb on - strand at 236.378 kb on + strand at 236.379 kb on - strand at 236.379 kb on - strand at 236.425 kb on + strand at 236.454 kb on + strand at 236.455 kb on - strand at 236.457 kb on - strand at 236.457 kb on - strand at 236.551 kb on + strand at 236.590 kb on + strand, within mtnC at 236.590 kb on + strand, within mtnC at 236.619 kb on + strand, within mtnC at 236.620 kb on - strand, within mtnC at 236.631 kb on + strand, within mtnC at 236.631 kb on + strand, within mtnC at 236.632 kb on - strand, within mtnC at 236.632 kb on - strand, within mtnC at 236.675 kb on + strand, within mtnC at 236.680 kb on - strand, within mtnC at 236.699 kb on + strand, within mtnC at 236.699 kb on + strand, within mtnC at 236.700 kb on - strand, within mtnC at 236.700 kb on - strand, within mtnC at 236.700 kb on - strand, within mtnC at 236.802 kb on + strand, within mtnC at 236.803 kb on - strand, within mtnC at 236.804 kb on + strand, within mtnC at 236.804 kb on + strand, within mtnC at 236.804 kb on + strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.844 kb on + strand, within mtnC at 236.845 kb on - strand, within mtnC at 236.849 kb on + strand, within mtnC at 236.849 kb on + strand, within mtnC at 236.850 kb on - strand, within mtnC at 237.298 kb on + strand, within LU632_RS01110 at 237.298 kb on + strand, within LU632_RS01110 at 237.298 kb on + strand, within LU632_RS01110 at 237.298 kb on + strand, within LU632_RS01110 at 237.298 kb on + strand, within LU632_RS01110 at 237.299 kb on - strand, within LU632_RS01110 at 237.302 kb on + strand, within LU632_RS01110 at 237.302 kb on + strand, within LU632_RS01110 at 237.303 kb on - strand, within LU632_RS01110 at 237.309 kb on + strand, within LU632_RS01110 at 237.309 kb on + strand, within LU632_RS01110 at 237.467 kb on - strand at 237.526 kb on + strand at 237.526 kb on + strand at 237.526 kb on + strand at 237.526 kb on + strand at 237.526 kb on + strand at 237.527 kb on - strand at 237.527 kb on - strand at 237.527 kb on - strand at 237.527 kb on - strand at 237.613 kb on - strand at 237.874 kb on - strand, within mtnA at 237.906 kb on + strand, within mtnA at 237.907 kb on - strand, within mtnA at 237.907 kb on - strand, within mtnA at 237.926 kb on + strand, within mtnA
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:PE, population C11, passage 1 (PE-S-C11-P1) remove 235,850 + -0.0 235,851 - -0.7 235,889 + -2.5 235,889 + +2.4 235,890 - -0.5 235,938 - -2.2 236,109 + +3.1 236,110 - +0.1 236,110 - +1.1 236,158 + +0.7 236,291 - +0.5 236,359 + +0.8 236,360 - -3.9 236,378 + -1.2 236,379 - -0.7 236,379 - -0.7 236,425 + -1.9 236,454 + +0.6 236,455 - +0.5 236,457 - +0.1 236,457 - -0.9 236,551 + -0.9 236,590 + mtnC LU632_RS01105 0.15 -3.7 236,590 + mtnC LU632_RS01105 0.15 -1.4 236,619 + mtnC LU632_RS01105 0.22 +2.6 236,620 - mtnC LU632_RS01105 0.22 +0.5 236,631 + mtnC LU632_RS01105 0.24 +0.4 236,631 + mtnC LU632_RS01105 0.24 -3.0 236,632 - mtnC LU632_RS01105 0.25 -0.5 236,632 - mtnC LU632_RS01105 0.25 -1.5 236,675 + mtnC LU632_RS01105 0.34 -0.9 236,680 - mtnC LU632_RS01105 0.36 -2.1 236,699 + mtnC LU632_RS01105 0.40 +1.0 236,699 + mtnC LU632_RS01105 0.40 +0.1 236,700 - mtnC LU632_RS01105 0.40 -0.3 236,700 - mtnC LU632_RS01105 0.40 -1.9 236,700 - mtnC LU632_RS01105 0.40 -0.1 236,802 + mtnC LU632_RS01105 0.63 -2.5 236,803 - mtnC LU632_RS01105 0.63 +2.0 236,804 + mtnC LU632_RS01105 0.64 +1.6 236,804 + mtnC LU632_RS01105 0.64 -1.9 236,804 + mtnC LU632_RS01105 0.64 +2.7 236,805 - mtnC LU632_RS01105 0.64 -2.2 236,805 - mtnC LU632_RS01105 0.64 +0.4 236,805 - mtnC LU632_RS01105 0.64 +0.0 236,805 - mtnC LU632_RS01105 0.64 -0.7 236,844 + mtnC LU632_RS01105 0.73 +0.0 236,845 - mtnC LU632_RS01105 0.73 +0.6 236,849 + mtnC LU632_RS01105 0.74 -1.7 236,849 + mtnC LU632_RS01105 0.74 -0.9 236,850 - mtnC LU632_RS01105 0.74 -0.2 237,298 + LU632_RS01110 0.77 -0.7 237,298 + LU632_RS01110 0.77 +1.1 237,298 + LU632_RS01110 0.77 +0.7 237,298 + LU632_RS01110 0.77 -2.8 237,298 + LU632_RS01110 0.77 -2.3 237,299 - LU632_RS01110 0.77 -1.2 237,302 + LU632_RS01110 0.78 +0.8 237,302 + LU632_RS01110 0.78 +1.4 237,303 - LU632_RS01110 0.78 +1.1 237,309 + LU632_RS01110 0.79 -1.5 237,309 + LU632_RS01110 0.79 +1.0 237,467 - -0.2 237,526 + +0.2 237,526 + +0.0 237,526 + -0.5 237,526 + +0.5 237,526 + -0.7 237,527 - -1.4 237,527 - -0.6 237,527 - +4.1 237,527 - +1.9 237,613 - +0.2 237,874 - mtnA LU632_RS01115 0.20 +0.4 237,906 + mtnA LU632_RS01115 0.23 +1.0 237,907 - mtnA LU632_RS01115 0.24 +0.8 237,907 - mtnA LU632_RS01115 0.24 +0.9 237,926 + mtnA LU632_RS01115 0.25 +0.5
Or see this region's nucleotide sequence