Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00505 and sicA are separated by 134 nucleotides sicA and sctE are separated by 14 nucleotides sctE and LU632_RS00520 are separated by 34 nucleotides
LU632_RS00505: LU632_RS00505 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 102,693 to 103,784
_RS00505
LU632_RS00510: sicA - type III secretion system translocator chaperone SicA, at 103,919 to 104,455
sicA
LU632_RS00515: sctE - type III secretion system translocon subunit SctE, at 104,470 to 106,341
sctE
LU632_RS00520: LU632_RS00520 - hypothetical protein, at 106,376 to 107,581
_RS00520
Position (kb) 104
105
106
107 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 103.541 kb on + strand, within LU632_RS00505 at 103.695 kb on - strand at 103.695 kb on - strand at 103.789 kb on + strand at 103.814 kb on - strand at 103.840 kb on - strand at 104.062 kb on + strand, within sicA at 104.213 kb on + strand, within sicA at 104.308 kb on - strand, within sicA at 104.353 kb on + strand, within sicA at 104.636 kb on + strand at 104.829 kb on + strand, within sctE at 104.980 kb on + strand, within sctE at 105.002 kb on - strand, within sctE at 105.116 kb on - strand, within sctE at 105.217 kb on - strand, within sctE at 105.220 kb on + strand, within sctE at 105.335 kb on + strand, within sctE at 105.336 kb on - strand, within sctE at 105.339 kb on + strand, within sctE at 105.381 kb on + strand, within sctE at 105.591 kb on + strand, within sctE at 105.727 kb on - strand, within sctE at 105.812 kb on + strand, within sctE at 105.812 kb on + strand, within sctE at 105.813 kb on - strand, within sctE at 105.845 kb on + strand, within sctE at 105.859 kb on + strand, within sctE at 105.952 kb on - strand, within sctE at 106.247 kb on + strand at 106.414 kb on + strand at 106.683 kb on + strand, within LU632_RS00520 at 106.684 kb on - strand, within LU632_RS00520 at 106.684 kb on - strand, within LU632_RS00520 at 106.738 kb on + strand, within LU632_RS00520 at 106.752 kb on + strand, within LU632_RS00520 at 106.758 kb on + strand, within LU632_RS00520 at 106.774 kb on + strand, within LU632_RS00520 at 106.793 kb on + strand, within LU632_RS00520 at 106.793 kb on + strand, within LU632_RS00520 at 106.794 kb on - strand, within LU632_RS00520 at 106.794 kb on - strand, within LU632_RS00520 at 106.862 kb on - strand, within LU632_RS00520 at 106.927 kb on + strand, within LU632_RS00520 at 106.927 kb on + strand, within LU632_RS00520 at 106.928 kb on - strand, within LU632_RS00520 at 106.931 kb on - strand, within LU632_RS00520 at 106.992 kb on + strand, within LU632_RS00520 at 106.992 kb on + strand, within LU632_RS00520 at 107.011 kb on + strand, within LU632_RS00520 at 107.011 kb on + strand, within LU632_RS00520 at 107.012 kb on - strand, within LU632_RS00520 at 107.060 kb on - strand, within LU632_RS00520 at 107.062 kb on + strand, within LU632_RS00520 at 107.065 kb on + strand, within LU632_RS00520 at 107.065 kb on + strand, within LU632_RS00520 at 107.134 kb on + strand, within LU632_RS00520 at 107.236 kb on - strand, within LU632_RS00520
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:PE, population C11, passage 1 (PE-S-C11-P1) remove 103,541 + LU632_RS00505 0.78 -1.2 103,695 - +2.8 103,695 - -2.2 103,789 + +2.1 103,814 - +0.5 103,840 - +0.1 104,062 + sicA LU632_RS00510 0.27 +1.1 104,213 + sicA LU632_RS00510 0.55 -0.6 104,308 - sicA LU632_RS00510 0.72 +0.9 104,353 + sicA LU632_RS00510 0.81 +0.8 104,636 + -3.1 104,829 + sctE LU632_RS00515 0.19 +1.5 104,980 + sctE LU632_RS00515 0.27 -0.8 105,002 - sctE LU632_RS00515 0.28 -0.8 105,116 - sctE LU632_RS00515 0.35 -2.5 105,217 - sctE LU632_RS00515 0.40 -0.9 105,220 + sctE LU632_RS00515 0.40 +1.3 105,335 + sctE LU632_RS00515 0.46 -1.4 105,336 - sctE LU632_RS00515 0.46 +0.3 105,339 + sctE LU632_RS00515 0.46 +0.9 105,381 + sctE LU632_RS00515 0.49 +0.0 105,591 + sctE LU632_RS00515 0.60 +0.9 105,727 - sctE LU632_RS00515 0.67 -1.2 105,812 + sctE LU632_RS00515 0.72 -2.2 105,812 + sctE LU632_RS00515 0.72 -0.2 105,813 - sctE LU632_RS00515 0.72 +2.1 105,845 + sctE LU632_RS00515 0.73 -2.5 105,859 + sctE LU632_RS00515 0.74 +0.4 105,952 - sctE LU632_RS00515 0.79 -1.2 106,247 + +1.8 106,414 + +0.4 106,683 + LU632_RS00520 0.25 +2.6 106,684 - LU632_RS00520 0.26 -1.8 106,684 - LU632_RS00520 0.26 -3.4 106,738 + LU632_RS00520 0.30 +0.4 106,752 + LU632_RS00520 0.31 -1.6 106,758 + LU632_RS00520 0.32 +0.2 106,774 + LU632_RS00520 0.33 -2.0 106,793 + LU632_RS00520 0.35 +0.3 106,793 + LU632_RS00520 0.35 -2.5 106,794 - LU632_RS00520 0.35 +0.1 106,794 - LU632_RS00520 0.35 +1.2 106,862 - LU632_RS00520 0.40 +0.6 106,927 + LU632_RS00520 0.46 +1.1 106,927 + LU632_RS00520 0.46 -1.7 106,928 - LU632_RS00520 0.46 -1.2 106,931 - LU632_RS00520 0.46 -1.7 106,992 + LU632_RS00520 0.51 +2.1 106,992 + LU632_RS00520 0.51 +0.9 107,011 + LU632_RS00520 0.53 +0.3 107,011 + LU632_RS00520 0.53 -2.1 107,012 - LU632_RS00520 0.53 -0.6 107,060 - LU632_RS00520 0.57 -0.7 107,062 + LU632_RS00520 0.57 +0.0 107,065 + LU632_RS00520 0.57 -3.1 107,065 + LU632_RS00520 0.57 +1.3 107,134 + LU632_RS00520 0.63 +1.4 107,236 - LU632_RS00520 0.71 -1.6
Or see this region's nucleotide sequence