Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sctC and sctW are separated by 6 nucleotides sctW and LU632_RS00460 are separated by 30 nucleotides
LU632_RS00450: sctC - type III secretion system outer membrane ring subunit SctC, at 92,021 to 93,793
sctC
LU632_RS00455: sctW - type III secretion system gatekeeper subunit SctW, at 93,800 to 94,921
sctW
LU632_RS00460: LU632_RS00460 - EscV/YscV/HrcV family type III secretion system export apparatus protein, at 94,952 to 97,006
_RS00460
Position (kb) 93
94
95 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 92.822 kb on + strand, within sctC at 92.905 kb on + strand, within sctC at 93.031 kb on + strand, within sctC at 93.033 kb on + strand, within sctC at 93.033 kb on + strand, within sctC at 93.033 kb on + strand, within sctC at 93.034 kb on - strand, within sctC at 93.034 kb on - strand, within sctC at 93.034 kb on - strand, within sctC at 93.037 kb on + strand, within sctC at 93.037 kb on + strand, within sctC at 93.037 kb on + strand, within sctC at 93.037 kb on + strand, within sctC at 93.037 kb on + strand, within sctC at 93.038 kb on - strand, within sctC at 93.038 kb on - strand, within sctC at 93.039 kb on + strand, within sctC at 93.039 kb on + strand, within sctC at 93.040 kb on - strand, within sctC at 93.040 kb on - strand, within sctC at 93.040 kb on - strand, within sctC at 93.059 kb on - strand, within sctC at 93.217 kb on - strand, within sctC at 93.217 kb on - strand, within sctC at 93.221 kb on - strand, within sctC at 93.253 kb on + strand, within sctC at 93.253 kb on + strand, within sctC at 93.254 kb on - strand, within sctC at 93.254 kb on - strand, within sctC at 93.256 kb on + strand, within sctC at 93.256 kb on + strand, within sctC at 93.271 kb on + strand, within sctC at 93.271 kb on + strand, within sctC at 93.271 kb on + strand, within sctC at 93.272 kb on - strand, within sctC at 93.314 kb on + strand, within sctC at 93.315 kb on - strand, within sctC at 93.315 kb on - strand, within sctC at 93.315 kb on - strand, within sctC at 93.436 kb on + strand, within sctC at 93.454 kb on + strand, within sctC at 93.515 kb on + strand, within sctC at 93.532 kb on + strand, within sctC at 93.599 kb on - strand, within sctC at 93.599 kb on - strand, within sctC at 93.599 kb on - strand, within sctC at 93.599 kb on - strand, within sctC at 93.602 kb on + strand, within sctC at 93.603 kb on - strand, within sctC at 93.603 kb on - strand, within sctC at 93.603 kb on - strand, within sctC at 93.655 kb on - strand at 93.731 kb on - strand at 93.806 kb on - strand at 94.009 kb on + strand, within sctW at 94.397 kb on - strand, within sctW at 94.472 kb on - strand, within sctW at 95.191 kb on + strand, within LU632_RS00460 at 95.342 kb on - strand, within LU632_RS00460 at 95.499 kb on - strand, within LU632_RS00460 at 95.508 kb on + strand, within LU632_RS00460 at 95.508 kb on + strand, within LU632_RS00460 at 95.508 kb on + strand, within LU632_RS00460 at 95.551 kb on + strand, within LU632_RS00460 at 95.560 kb on + strand, within LU632_RS00460 at 95.635 kb on + strand, within LU632_RS00460 at 95.640 kb on - strand, within LU632_RS00460 at 95.640 kb on - strand, within LU632_RS00460 at 95.641 kb on + strand, within LU632_RS00460 at 95.642 kb on - strand, within LU632_RS00460 at 95.642 kb on - strand, within LU632_RS00460 at 95.655 kb on + strand, within LU632_RS00460 at 95.655 kb on + strand, within LU632_RS00460 at 95.680 kb on - strand, within LU632_RS00460 at 95.734 kb on + strand, within LU632_RS00460
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:PE, population C11, passage 1 (PE-S-C11-P1) remove 92,822 + sctC LU632_RS00450 0.45 -0.2 92,905 + sctC LU632_RS00450 0.50 +0.5 93,031 + sctC LU632_RS00450 0.57 +0.4 93,033 + sctC LU632_RS00450 0.57 +0.3 93,033 + sctC LU632_RS00450 0.57 -1.7 93,033 + sctC LU632_RS00450 0.57 +0.1 93,034 - sctC LU632_RS00450 0.57 +0.2 93,034 - sctC LU632_RS00450 0.57 -0.4 93,034 - sctC LU632_RS00450 0.57 +0.4 93,037 + sctC LU632_RS00450 0.57 +1.0 93,037 + sctC LU632_RS00450 0.57 +1.1 93,037 + sctC LU632_RS00450 0.57 +0.9 93,037 + sctC LU632_RS00450 0.57 -0.6 93,037 + sctC LU632_RS00450 0.57 -1.1 93,038 - sctC LU632_RS00450 0.57 +0.0 93,038 - sctC LU632_RS00450 0.57 +0.8 93,039 + sctC LU632_RS00450 0.57 +1.4 93,039 + sctC LU632_RS00450 0.57 -0.1 93,040 - sctC LU632_RS00450 0.57 +0.2 93,040 - sctC LU632_RS00450 0.57 +0.6 93,040 - sctC LU632_RS00450 0.57 +1.5 93,059 - sctC LU632_RS00450 0.59 -1.8 93,217 - sctC LU632_RS00450 0.67 +0.6 93,217 - sctC LU632_RS00450 0.67 +0.5 93,221 - sctC LU632_RS00450 0.68 -1.4 93,253 + sctC LU632_RS00450 0.69 +0.7 93,253 + sctC LU632_RS00450 0.69 +0.7 93,254 - sctC LU632_RS00450 0.70 +0.1 93,254 - sctC LU632_RS00450 0.70 +0.5 93,256 + sctC LU632_RS00450 0.70 -0.9 93,256 + sctC LU632_RS00450 0.70 -1.0 93,271 + sctC LU632_RS00450 0.71 +0.5 93,271 + sctC LU632_RS00450 0.71 +0.4 93,271 + sctC LU632_RS00450 0.71 +0.9 93,272 - sctC LU632_RS00450 0.71 -2.1 93,314 + sctC LU632_RS00450 0.73 +0.3 93,315 - sctC LU632_RS00450 0.73 -0.1 93,315 - sctC LU632_RS00450 0.73 +0.9 93,315 - sctC LU632_RS00450 0.73 -0.9 93,436 + sctC LU632_RS00450 0.80 +1.4 93,454 + sctC LU632_RS00450 0.81 +0.9 93,515 + sctC LU632_RS00450 0.84 +0.2 93,532 + sctC LU632_RS00450 0.85 -0.7 93,599 - sctC LU632_RS00450 0.89 -1.4 93,599 - sctC LU632_RS00450 0.89 +0.4 93,599 - sctC LU632_RS00450 0.89 +0.6 93,599 - sctC LU632_RS00450 0.89 -1.4 93,602 + sctC LU632_RS00450 0.89 -0.3 93,603 - sctC LU632_RS00450 0.89 +0.5 93,603 - sctC LU632_RS00450 0.89 -0.7 93,603 - sctC LU632_RS00450 0.89 -0.1 93,655 - +0.7 93,731 - -1.4 93,806 - +0.6 94,009 + sctW LU632_RS00455 0.19 +0.3 94,397 - sctW LU632_RS00455 0.53 +0.8 94,472 - sctW LU632_RS00455 0.60 +0.7 95,191 + LU632_RS00460 0.12 -0.4 95,342 - LU632_RS00460 0.19 +1.2 95,499 - LU632_RS00460 0.27 +0.1 95,508 + LU632_RS00460 0.27 +0.8 95,508 + LU632_RS00460 0.27 +2.4 95,508 + LU632_RS00460 0.27 -3.5 95,551 + LU632_RS00460 0.29 -0.8 95,560 + LU632_RS00460 0.30 +0.1 95,635 + LU632_RS00460 0.33 -1.4 95,640 - LU632_RS00460 0.33 +1.3 95,640 - LU632_RS00460 0.33 -0.9 95,641 + LU632_RS00460 0.34 +0.6 95,642 - LU632_RS00460 0.34 -1.6 95,642 - LU632_RS00460 0.34 -1.1 95,655 + LU632_RS00460 0.34 -1.7 95,655 + LU632_RS00460 0.34 -0.1 95,680 - LU632_RS00460 0.35 +0.1 95,734 + LU632_RS00460 0.38 -1.3
Or see this region's nucleotide sequence