Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00295

Experiment: Experiment:PE, population C11, passage 1 (PE-S-C11-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00290 and LU632_RS00295 are separated by 31 nucleotidesLU632_RS00295 and LU632_RS00300 are separated by 218 nucleotides LU632_RS00290: LU632_RS00290 - hypothetical protein, at 58,592 to 59,620 _RS00290 LU632_RS00295: LU632_RS00295 - IS1 family transposase, at 59,652 to 60,349 _RS00295 LU632_RS00300: LU632_RS00300 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 60,568 to 61,599 _RS00300 Position (kb) 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 59.002 kb on - strand, within LU632_RS00290at 59.131 kb on - strand, within LU632_RS00290at 59.160 kb on + strand, within LU632_RS00290at 59.166 kb on - strand, within LU632_RS00290at 59.250 kb on - strand, within LU632_RS00290at 59.293 kb on + strand, within LU632_RS00290at 59.356 kb on - strand, within LU632_RS00290at 59.540 kb on + strandat 59.540 kb on + strandat 59.563 kb on + strandat 59.570 kb on - strandat 59.582 kb on - strandat 60.380 kb on + strandat 60.381 kb on - strandat 60.383 kb on + strandat 60.383 kb on + strandat 60.384 kb on - strandat 60.387 kb on + strandat 60.405 kb on - strandat 60.428 kb on + strandat 60.428 kb on + strandat 60.428 kb on + strandat 60.432 kb on - strandat 60.432 kb on - strandat 60.470 kb on - strandat 60.470 kb on - strandat 60.499 kb on - strandat 60.519 kb on - strandat 60.735 kb on - strand, within LU632_RS00300at 60.735 kb on - strand, within LU632_RS00300at 60.735 kb on - strand, within LU632_RS00300at 60.748 kb on + strand, within LU632_RS00300at 60.889 kb on + strand, within LU632_RS00300at 60.889 kb on + strand, within LU632_RS00300at 60.889 kb on + strand, within LU632_RS00300at 60.889 kb on + strand, within LU632_RS00300at 60.889 kb on + strand, within LU632_RS00300at 60.890 kb on - strand, within LU632_RS00300at 60.918 kb on + strand, within LU632_RS00300at 60.918 kb on + strand, within LU632_RS00300at 61.025 kb on + strand, within LU632_RS00300at 61.025 kb on + strand, within LU632_RS00300at 61.025 kb on + strand, within LU632_RS00300at 61.025 kb on + strand, within LU632_RS00300at 61.025 kb on + strand, within LU632_RS00300at 61.026 kb on - strand, within LU632_RS00300at 61.181 kb on + strand, within LU632_RS00300at 61.181 kb on + strand, within LU632_RS00300at 61.181 kb on + strand, within LU632_RS00300at 61.183 kb on + strand, within LU632_RS00300at 61.184 kb on - strand, within LU632_RS00300at 61.243 kb on - strand, within LU632_RS00300at 61.274 kb on + strand, within LU632_RS00300at 61.275 kb on - strand, within LU632_RS00300at 61.277 kb on - strand, within LU632_RS00300at 61.284 kb on + strand, within LU632_RS00300

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:PE, population C11, passage 1 (PE-S-C11-P1)
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59,002 - LU632_RS00290 0.40 +2.2
59,131 - LU632_RS00290 0.52 -0.9
59,160 + LU632_RS00290 0.55 +0.9
59,166 - LU632_RS00290 0.56 +1.0
59,250 - LU632_RS00290 0.64 +1.5
59,293 + LU632_RS00290 0.68 -1.7
59,356 - LU632_RS00290 0.74 -1.7
59,540 + -1.8
59,540 + +1.5
59,563 + +1.6
59,570 - +0.0
59,582 - +0.1
60,380 + +0.2
60,381 - -0.7
60,383 + -1.1
60,383 + -0.7
60,384 - -3.5
60,387 + -1.8
60,405 - -0.2
60,428 + +0.6
60,428 + +0.5
60,428 + +0.4
60,432 - -2.4
60,432 - +2.1
60,470 - -0.6
60,470 - -1.5
60,499 - -2.7
60,519 - -2.3
60,735 - LU632_RS00300 0.16 +0.6
60,735 - LU632_RS00300 0.16 -0.1
60,735 - LU632_RS00300 0.16 -0.4
60,748 + LU632_RS00300 0.17 -1.4
60,889 + LU632_RS00300 0.31 -0.5
60,889 + LU632_RS00300 0.31 -1.5
60,889 + LU632_RS00300 0.31 +0.5
60,889 + LU632_RS00300 0.31 +0.2
60,889 + LU632_RS00300 0.31 +0.8
60,890 - LU632_RS00300 0.31 +0.8
60,918 + LU632_RS00300 0.34 -2.7
60,918 + LU632_RS00300 0.34 -0.0
61,025 + LU632_RS00300 0.44 -0.4
61,025 + LU632_RS00300 0.44 -0.3
61,025 + LU632_RS00300 0.44 +0.6
61,025 + LU632_RS00300 0.44 +1.0
61,025 + LU632_RS00300 0.44 -1.0
61,026 - LU632_RS00300 0.44 +0.9
61,181 + LU632_RS00300 0.59 -0.2
61,181 + LU632_RS00300 0.59 +0.7
61,181 + LU632_RS00300 0.59 -2.4
61,183 + LU632_RS00300 0.60 +3.3
61,184 - LU632_RS00300 0.60 +0.7
61,243 - LU632_RS00300 0.65 -0.7
61,274 + LU632_RS00300 0.68 -0.6
61,275 - LU632_RS00300 0.69 +0.8
61,277 - LU632_RS00300 0.69 -0.0
61,284 + LU632_RS00300 0.69 -0.0

Or see this region's nucleotide sequence