Strain Fitness in Escherichia coli ECRC102 around NIAGMN_11705

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyiiG and fdhD are separated by 152 nucleotidesfdhD and fdnG are separated by 193 nucleotides NIAGMN_11700: yiiG - Uncharacterized protein YiiG, at 2,315,031 to 2,316,086 yiiG NIAGMN_11705: fdhD - formate dehydrogenase accessory sulfurtransferase FdhD, at 2,316,239 to 2,317,072 fdhD NIAGMN_11710: fdnG - formate dehydrogenase-N subunit alpha, at 2,317,266 to 2,320,316 fdnG Position (kb) 2316 2317 2318Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2315.554 kb on + strand, within yiiGat 2315.569 kb on + strand, within yiiGat 2315.570 kb on - strand, within yiiGat 2315.570 kb on - strand, within yiiGat 2315.572 kb on + strand, within yiiGat 2315.572 kb on + strand, within yiiGat 2315.573 kb on - strand, within yiiGat 2315.594 kb on + strand, within yiiGat 2315.622 kb on - strand, within yiiGat 2315.623 kb on + strand, within yiiGat 2315.623 kb on + strand, within yiiGat 2315.624 kb on - strand, within yiiGat 2315.624 kb on - strand, within yiiGat 2315.624 kb on - strand, within yiiGat 2315.726 kb on - strand, within yiiGat 2315.726 kb on - strand, within yiiGat 2315.734 kb on + strand, within yiiGat 2315.735 kb on - strand, within yiiGat 2315.742 kb on - strand, within yiiGat 2315.768 kb on + strand, within yiiGat 2315.823 kb on + strand, within yiiGat 2315.823 kb on + strand, within yiiGat 2315.833 kb on + strand, within yiiGat 2315.834 kb on - strand, within yiiGat 2315.834 kb on - strand, within yiiGat 2315.845 kb on + strand, within yiiGat 2315.845 kb on + strand, within yiiGat 2315.845 kb on + strand, within yiiGat 2315.845 kb on + strand, within yiiGat 2315.846 kb on - strand, within yiiGat 2315.846 kb on - strand, within yiiGat 2315.846 kb on - strand, within yiiGat 2315.846 kb on - strand, within yiiGat 2315.912 kb on + strand, within yiiGat 2315.913 kb on - strand, within yiiGat 2315.913 kb on - strand, within yiiGat 2315.942 kb on + strand, within yiiGat 2315.979 kb on - strand, within yiiGat 2315.979 kb on - strand, within yiiGat 2315.979 kb on - strand, within yiiGat 2316.057 kb on - strandat 2316.099 kb on + strandat 2316.108 kb on - strandat 2316.172 kb on + strandat 2316.217 kb on + strandat 2316.232 kb on - strandat 2316.232 kb on - strandat 2316.266 kb on - strandat 2316.266 kb on - strandat 2316.267 kb on + strandat 2316.299 kb on + strandat 2316.313 kb on + strandat 2316.332 kb on + strand, within fdhDat 2316.375 kb on - strand, within fdhDat 2316.375 kb on - strand, within fdhDat 2316.565 kb on + strand, within fdhDat 2316.565 kb on + strand, within fdhDat 2316.565 kb on + strand, within fdhDat 2316.566 kb on - strand, within fdhDat 2316.566 kb on - strand, within fdhDat 2316.566 kb on - strand, within fdhDat 2316.611 kb on + strand, within fdhDat 2316.611 kb on + strand, within fdhDat 2316.611 kb on + strand, within fdhDat 2316.611 kb on + strand, within fdhDat 2316.611 kb on + strand, within fdhDat 2316.611 kb on + strand, within fdhDat 2316.611 kb on + strand, within fdhDat 2316.612 kb on - strand, within fdhDat 2316.685 kb on + strand, within fdhDat 2316.686 kb on - strand, within fdhDat 2316.686 kb on - strand, within fdhDat 2316.686 kb on - strand, within fdhDat 2316.686 kb on - strand, within fdhDat 2316.686 kb on - strand, within fdhDat 2316.704 kb on + strand, within fdhDat 2316.719 kb on - strand, within fdhDat 2316.719 kb on - strand, within fdhDat 2316.786 kb on - strand, within fdhDat 2316.799 kb on + strand, within fdhDat 2316.800 kb on - strand, within fdhDat 2316.830 kb on - strand, within fdhDat 2316.845 kb on + strand, within fdhDat 2316.845 kb on + strand, within fdhDat 2316.845 kb on + strand, within fdhDat 2316.845 kb on + strand, within fdhDat 2316.845 kb on + strand, within fdhDat 2316.845 kb on + strand, within fdhDat 2316.846 kb on - strand, within fdhDat 2316.846 kb on - strand, within fdhDat 2316.849 kb on - strand, within fdhDat 2316.882 kb on + strand, within fdhDat 2316.882 kb on + strand, within fdhDat 2316.882 kb on + strand, within fdhDat 2316.882 kb on + strand, within fdhDat 2316.883 kb on - strand, within fdhDat 2316.883 kb on - strand, within fdhDat 2316.971 kb on + strand, within fdhDat 2316.986 kb on + strand, within fdhDat 2317.031 kb on - strandat 2317.088 kb on + strandat 2317.088 kb on + strandat 2317.089 kb on - strandat 2317.089 kb on - strandat 2317.110 kb on - strandat 2317.114 kb on + strandat 2317.114 kb on + strandat 2317.228 kb on + strandat 2317.293 kb on - strandat 2317.311 kb on - strandat 2317.355 kb on - strandat 2317.377 kb on + strandat 2317.377 kb on + strandat 2317.377 kb on + strandat 2317.380 kb on - strandat 2317.409 kb on + strandat 2317.409 kb on + strandat 2317.409 kb on + strandat 2317.410 kb on - strandat 2317.410 kb on - strandat 2317.410 kb on - strandat 2317.410 kb on - strandat 2317.419 kb on + strandat 2317.419 kb on + strandat 2317.419 kb on + strandat 2317.420 kb on - strandat 2317.420 kb on - strandat 2317.420 kb on - strandat 2317.420 kb on - strandat 2317.420 kb on - strandat 2317.420 kb on - strandat 2317.420 kb on - strandat 2317.420 kb on - strandat 2317.420 kb on - strandat 2317.429 kb on + strandat 2317.449 kb on + strandat 2317.449 kb on + strandat 2317.449 kb on + strandat 2317.449 kb on + strandat 2317.450 kb on - strandat 2317.450 kb on - strandat 2317.487 kb on + strandat 2317.487 kb on + strandat 2317.487 kb on + strandat 2317.488 kb on - strandat 2317.488 kb on - strandat 2317.488 kb on - strandat 2317.488 kb on - strandat 2317.602 kb on + strand, within fdnGat 2317.623 kb on - strand, within fdnGat 2317.623 kb on - strand, within fdnGat 2317.695 kb on - strand, within fdnGat 2317.698 kb on + strand, within fdnGat 2317.698 kb on + strand, within fdnGat 2317.698 kb on + strand, within fdnGat 2317.698 kb on + strand, within fdnGat 2317.699 kb on - strand, within fdnGat 2317.699 kb on - strand, within fdnGat 2317.699 kb on - strand, within fdnGat 2317.699 kb on - strand, within fdnGat 2317.699 kb on - strand, within fdnGat 2317.699 kb on - strand, within fdnGat 2317.699 kb on - strand, within fdnGat 2317.699 kb on - strand, within fdnGat 2317.821 kb on - strand, within fdnGat 2318.058 kb on - strand, within fdnG

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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2,315,554 + yiiG NIAGMN_11700 0.50 +0.1
2,315,569 + yiiG NIAGMN_11700 0.51 +0.0
2,315,570 - yiiG NIAGMN_11700 0.51 +1.0
2,315,570 - yiiG NIAGMN_11700 0.51 -0.2
2,315,572 + yiiG NIAGMN_11700 0.51 -0.6
2,315,572 + yiiG NIAGMN_11700 0.51 +1.0
2,315,573 - yiiG NIAGMN_11700 0.51 -0.5
2,315,594 + yiiG NIAGMN_11700 0.53 -0.3
2,315,622 - yiiG NIAGMN_11700 0.56 +0.8
2,315,623 + yiiG NIAGMN_11700 0.56 -1.2
2,315,623 + yiiG NIAGMN_11700 0.56 +1.2
2,315,624 - yiiG NIAGMN_11700 0.56 +1.1
2,315,624 - yiiG NIAGMN_11700 0.56 -0.8
2,315,624 - yiiG NIAGMN_11700 0.56 -0.3
2,315,726 - yiiG NIAGMN_11700 0.66 +1.2
2,315,726 - yiiG NIAGMN_11700 0.66 +1.8
2,315,734 + yiiG NIAGMN_11700 0.67 -0.3
2,315,735 - yiiG NIAGMN_11700 0.67 -0.2
2,315,742 - yiiG NIAGMN_11700 0.67 -1.1
2,315,768 + yiiG NIAGMN_11700 0.70 -0.4
2,315,823 + yiiG NIAGMN_11700 0.75 +0.7
2,315,823 + yiiG NIAGMN_11700 0.75 -0.8
2,315,833 + yiiG NIAGMN_11700 0.76 +1.9
2,315,834 - yiiG NIAGMN_11700 0.76 -1.0
2,315,834 - yiiG NIAGMN_11700 0.76 -0.6
2,315,845 + yiiG NIAGMN_11700 0.77 +0.2
2,315,845 + yiiG NIAGMN_11700 0.77 +0.9
2,315,845 + yiiG NIAGMN_11700 0.77 +0.6
2,315,845 + yiiG NIAGMN_11700 0.77 +0.8
2,315,846 - yiiG NIAGMN_11700 0.77 -1.3
2,315,846 - yiiG NIAGMN_11700 0.77 +0.9
2,315,846 - yiiG NIAGMN_11700 0.77 +1.1
2,315,846 - yiiG NIAGMN_11700 0.77 -1.0
2,315,912 + yiiG NIAGMN_11700 0.83 -0.1
2,315,913 - yiiG NIAGMN_11700 0.84 -0.1
2,315,913 - yiiG NIAGMN_11700 0.84 +1.4
2,315,942 + yiiG NIAGMN_11700 0.86 -1.2
2,315,979 - yiiG NIAGMN_11700 0.90 -0.1
2,315,979 - yiiG NIAGMN_11700 0.90 -1.1
2,315,979 - yiiG NIAGMN_11700 0.90 +0.1
2,316,057 - +0.7
2,316,099 + +1.5
2,316,108 - +0.1
2,316,172 + +0.5
2,316,217 + -0.2
2,316,232 - +0.2
2,316,232 - -1.5
2,316,266 - -0.3
2,316,266 - +0.7
2,316,267 + +0.7
2,316,299 + -0.4
2,316,313 + -0.2
2,316,332 + fdhD NIAGMN_11705 0.11 -0.3
2,316,375 - fdhD NIAGMN_11705 0.16 -0.3
2,316,375 - fdhD NIAGMN_11705 0.16 -0.4
2,316,565 + fdhD NIAGMN_11705 0.39 +2.7
2,316,565 + fdhD NIAGMN_11705 0.39 +1.4
2,316,565 + fdhD NIAGMN_11705 0.39 -0.5
2,316,566 - fdhD NIAGMN_11705 0.39 +0.4
2,316,566 - fdhD NIAGMN_11705 0.39 +0.7
2,316,566 - fdhD NIAGMN_11705 0.39 -0.4
2,316,611 + fdhD NIAGMN_11705 0.45 -0.8
2,316,611 + fdhD NIAGMN_11705 0.45 -0.2
2,316,611 + fdhD NIAGMN_11705 0.45 +0.1
2,316,611 + fdhD NIAGMN_11705 0.45 +1.6
2,316,611 + fdhD NIAGMN_11705 0.45 +0.0
2,316,611 + fdhD NIAGMN_11705 0.45 -1.4
2,316,611 + fdhD NIAGMN_11705 0.45 +1.9
2,316,612 - fdhD NIAGMN_11705 0.45 -2.0
2,316,685 + fdhD NIAGMN_11705 0.53 +0.4
2,316,686 - fdhD NIAGMN_11705 0.54 +0.0
2,316,686 - fdhD NIAGMN_11705 0.54 +0.1
2,316,686 - fdhD NIAGMN_11705 0.54 -0.2
2,316,686 - fdhD NIAGMN_11705 0.54 +1.3
2,316,686 - fdhD NIAGMN_11705 0.54 -1.3
2,316,704 + fdhD NIAGMN_11705 0.56 +0.6
2,316,719 - fdhD NIAGMN_11705 0.58 -0.4
2,316,719 - fdhD NIAGMN_11705 0.58 -0.4
2,316,786 - fdhD NIAGMN_11705 0.66 -2.2
2,316,799 + fdhD NIAGMN_11705 0.67 +0.8
2,316,800 - fdhD NIAGMN_11705 0.67 -0.1
2,316,830 - fdhD NIAGMN_11705 0.71 +0.9
2,316,845 + fdhD NIAGMN_11705 0.73 +0.1
2,316,845 + fdhD NIAGMN_11705 0.73 +0.3
2,316,845 + fdhD NIAGMN_11705 0.73 +0.4
2,316,845 + fdhD NIAGMN_11705 0.73 -0.3
2,316,845 + fdhD NIAGMN_11705 0.73 +0.7
2,316,845 + fdhD NIAGMN_11705 0.73 +0.6
2,316,846 - fdhD NIAGMN_11705 0.73 -0.1
2,316,846 - fdhD NIAGMN_11705 0.73 -0.4
2,316,849 - fdhD NIAGMN_11705 0.73 +0.2
2,316,882 + fdhD NIAGMN_11705 0.77 -0.7
2,316,882 + fdhD NIAGMN_11705 0.77 +0.1
2,316,882 + fdhD NIAGMN_11705 0.77 +0.4
2,316,882 + fdhD NIAGMN_11705 0.77 -0.6
2,316,883 - fdhD NIAGMN_11705 0.77 +0.4
2,316,883 - fdhD NIAGMN_11705 0.77 +0.1
2,316,971 + fdhD NIAGMN_11705 0.88 -0.4
2,316,986 + fdhD NIAGMN_11705 0.90 -0.0
2,317,031 - +0.1
2,317,088 + -0.6
2,317,088 + +0.8
2,317,089 - -0.6
2,317,089 - -0.4
2,317,110 - -0.1
2,317,114 + +0.7
2,317,114 + +0.2
2,317,228 + -1.0
2,317,293 - +1.4
2,317,311 - +0.0
2,317,355 - -0.1
2,317,377 + +0.9
2,317,377 + +0.2
2,317,377 + +0.1
2,317,380 - -0.5
2,317,409 + +2.1
2,317,409 + +0.6
2,317,409 + -0.0
2,317,410 - -3.3
2,317,410 - -2.1
2,317,410 - -0.3
2,317,410 - -0.5
2,317,419 + +0.5
2,317,419 + +0.4
2,317,419 + -0.1
2,317,420 - -0.5
2,317,420 - +0.2
2,317,420 - +0.8
2,317,420 - +2.0
2,317,420 - -1.1
2,317,420 - -0.2
2,317,420 - +0.4
2,317,420 - -0.4
2,317,420 - -0.1
2,317,429 + -0.8
2,317,449 + -0.5
2,317,449 + +0.7
2,317,449 + -1.2
2,317,449 + +1.0
2,317,450 - -0.8
2,317,450 - +0.7
2,317,487 + -0.0
2,317,487 + +0.4
2,317,487 + +0.7
2,317,488 - +0.2
2,317,488 - +0.2
2,317,488 - +0.0
2,317,488 - -0.1
2,317,602 + fdnG NIAGMN_11710 0.11 +0.7
2,317,623 - fdnG NIAGMN_11710 0.12 -0.3
2,317,623 - fdnG NIAGMN_11710 0.12 +0.2
2,317,695 - fdnG NIAGMN_11710 0.14 -0.6
2,317,698 + fdnG NIAGMN_11710 0.14 -0.0
2,317,698 + fdnG NIAGMN_11710 0.14 -0.0
2,317,698 + fdnG NIAGMN_11710 0.14 +1.9
2,317,698 + fdnG NIAGMN_11710 0.14 -0.8
2,317,699 - fdnG NIAGMN_11710 0.14 -0.2
2,317,699 - fdnG NIAGMN_11710 0.14 +0.3
2,317,699 - fdnG NIAGMN_11710 0.14 -0.6
2,317,699 - fdnG NIAGMN_11710 0.14 +2.3
2,317,699 - fdnG NIAGMN_11710 0.14 -0.8
2,317,699 - fdnG NIAGMN_11710 0.14 +2.0
2,317,699 - fdnG NIAGMN_11710 0.14 +0.2
2,317,699 - fdnG NIAGMN_11710 0.14 +0.7
2,317,821 - fdnG NIAGMN_11710 0.18 -0.0
2,318,058 - fdnG NIAGMN_11710 0.26 -1.0

Or see this region's nucleotide sequence