Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS02230

Experiment: Glycogen; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS02225 and ABI39_RS02230 are separated by 65 nucleotidesABI39_RS02230 and ABI39_RS02235 are separated by 20 nucleotidesABI39_RS02235 and ABI39_RS02240 are separated by 87 nucleotides ABI39_RS02225: ABI39_RS02225 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit, at 648,624 to 651,845 _RS02225 ABI39_RS02230: ABI39_RS02230 - TonB-dependent receptor, at 651,911 to 654,715 _RS02230 ABI39_RS02235: ABI39_RS02235 - TlpA family protein disulfide reductase, at 654,736 to 655,236 _RS02235 ABI39_RS02240: ABI39_RS02240 - peroxide stress protein YaaA, at 655,324 to 656,091 _RS02240 Position (kb) 651 652 653 654 655Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 650.998 kb on + strand, within ABI39_RS02225at 651.237 kb on + strand, within ABI39_RS02225at 651.340 kb on + strand, within ABI39_RS02225at 651.345 kb on - strand, within ABI39_RS02225at 651.408 kb on - strand, within ABI39_RS02225at 651.408 kb on - strand, within ABI39_RS02225at 651.528 kb on + strandat 651.576 kb on - strandat 651.662 kb on - strandat 651.837 kb on + strandat 651.905 kb on + strandat 652.141 kb on + strandat 652.159 kb on + strandat 652.174 kb on + strandat 652.258 kb on + strand, within ABI39_RS02230at 652.487 kb on + strand, within ABI39_RS02230at 652.487 kb on + strand, within ABI39_RS02230at 652.487 kb on + strand, within ABI39_RS02230at 652.540 kb on - strand, within ABI39_RS02230at 652.540 kb on - strand, within ABI39_RS02230at 652.541 kb on + strand, within ABI39_RS02230at 652.578 kb on - strand, within ABI39_RS02230at 652.580 kb on - strand, within ABI39_RS02230at 652.595 kb on - strand, within ABI39_RS02230at 652.598 kb on - strand, within ABI39_RS02230at 652.615 kb on - strand, within ABI39_RS02230at 652.615 kb on - strand, within ABI39_RS02230at 652.663 kb on + strand, within ABI39_RS02230at 652.749 kb on + strand, within ABI39_RS02230at 652.782 kb on + strand, within ABI39_RS02230at 652.783 kb on - strand, within ABI39_RS02230at 652.792 kb on + strand, within ABI39_RS02230at 652.862 kb on - strand, within ABI39_RS02230at 652.865 kb on + strand, within ABI39_RS02230at 652.897 kb on + strand, within ABI39_RS02230at 652.951 kb on + strand, within ABI39_RS02230at 653.001 kb on + strand, within ABI39_RS02230at 653.001 kb on + strand, within ABI39_RS02230at 653.080 kb on - strand, within ABI39_RS02230at 653.095 kb on + strand, within ABI39_RS02230at 653.183 kb on + strand, within ABI39_RS02230at 653.218 kb on + strand, within ABI39_RS02230at 653.263 kb on - strand, within ABI39_RS02230at 653.267 kb on - strand, within ABI39_RS02230at 653.284 kb on - strand, within ABI39_RS02230at 653.402 kb on - strand, within ABI39_RS02230at 653.600 kb on - strand, within ABI39_RS02230at 653.601 kb on + strand, within ABI39_RS02230at 653.603 kb on - strand, within ABI39_RS02230at 653.604 kb on - strand, within ABI39_RS02230at 653.604 kb on - strand, within ABI39_RS02230at 653.624 kb on - strand, within ABI39_RS02230at 653.650 kb on + strand, within ABI39_RS02230at 653.651 kb on - strand, within ABI39_RS02230at 653.659 kb on - strand, within ABI39_RS02230at 653.679 kb on + strand, within ABI39_RS02230at 653.679 kb on + strand, within ABI39_RS02230at 653.716 kb on + strand, within ABI39_RS02230at 653.815 kb on + strand, within ABI39_RS02230at 653.862 kb on + strand, within ABI39_RS02230at 653.917 kb on - strand, within ABI39_RS02230at 653.917 kb on - strand, within ABI39_RS02230at 654.060 kb on - strand, within ABI39_RS02230at 654.272 kb on + strand, within ABI39_RS02230at 654.273 kb on - strand, within ABI39_RS02230at 654.276 kb on - strand, within ABI39_RS02230at 654.335 kb on + strand, within ABI39_RS02230at 654.451 kb on - strandat 654.451 kb on - strandat 654.506 kb on - strandat 654.514 kb on + strandat 654.926 kb on + strand, within ABI39_RS02235at 654.928 kb on - strand, within ABI39_RS02235at 654.930 kb on - strand, within ABI39_RS02235at 654.970 kb on + strand, within ABI39_RS02235at 654.991 kb on - strand, within ABI39_RS02235at 655.110 kb on + strand, within ABI39_RS02235at 655.152 kb on + strand, within ABI39_RS02235at 655.251 kb on - strandat 655.275 kb on - strandat 655.324 kb on - strandat 655.373 kb on + strandat 655.392 kb on + strandat 655.392 kb on + strandat 655.434 kb on + strand, within ABI39_RS02240at 655.435 kb on - strand, within ABI39_RS02240at 655.490 kb on + strand, within ABI39_RS02240at 655.490 kb on + strand, within ABI39_RS02240at 655.506 kb on + strand, within ABI39_RS02240at 655.577 kb on + strand, within ABI39_RS02240at 655.582 kb on - strand, within ABI39_RS02240at 655.696 kb on + strand, within ABI39_RS02240

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycogen; filtered 2.5 mg/ml (C)
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650,998 + ABI39_RS02225 0.74 -3.2
651,237 + ABI39_RS02225 0.81 -3.2
651,340 + ABI39_RS02225 0.84 -2.9
651,345 - ABI39_RS02225 0.84 -1.8
651,408 - ABI39_RS02225 0.86 -3.4
651,408 - ABI39_RS02225 0.86 -3.0
651,528 + -4.4
651,576 - -1.8
651,662 - -3.3
651,837 + -2.7
651,905 + +0.7
652,141 + +0.3
652,159 + +0.1
652,174 + +0.6
652,258 + ABI39_RS02230 0.12 +0.5
652,487 + ABI39_RS02230 0.21 +0.2
652,487 + ABI39_RS02230 0.21 +0.5
652,487 + ABI39_RS02230 0.21 +0.2
652,540 - ABI39_RS02230 0.22 +0.6
652,540 - ABI39_RS02230 0.22 -0.5
652,541 + ABI39_RS02230 0.22 +0.2
652,578 - ABI39_RS02230 0.24 +0.7
652,580 - ABI39_RS02230 0.24 -0.3
652,595 - ABI39_RS02230 0.24 +0.1
652,598 - ABI39_RS02230 0.24 +0.5
652,615 - ABI39_RS02230 0.25 -0.6
652,615 - ABI39_RS02230 0.25 -0.2
652,663 + ABI39_RS02230 0.27 -0.2
652,749 + ABI39_RS02230 0.30 -0.7
652,782 + ABI39_RS02230 0.31 +0.3
652,783 - ABI39_RS02230 0.31 -0.1
652,792 + ABI39_RS02230 0.31 +0.3
652,862 - ABI39_RS02230 0.34 +0.8
652,865 + ABI39_RS02230 0.34 +0.2
652,897 + ABI39_RS02230 0.35 -0.8
652,951 + ABI39_RS02230 0.37 -0.5
653,001 + ABI39_RS02230 0.39 +0.0
653,001 + ABI39_RS02230 0.39 +0.7
653,080 - ABI39_RS02230 0.42 +0.3
653,095 + ABI39_RS02230 0.42 +0.8
653,183 + ABI39_RS02230 0.45 -0.1
653,218 + ABI39_RS02230 0.47 -1.4
653,263 - ABI39_RS02230 0.48 -0.1
653,267 - ABI39_RS02230 0.48 +0.9
653,284 - ABI39_RS02230 0.49 -0.4
653,402 - ABI39_RS02230 0.53 +0.2
653,600 - ABI39_RS02230 0.60 -0.5
653,601 + ABI39_RS02230 0.60 +0.3
653,603 - ABI39_RS02230 0.60 +1.4
653,604 - ABI39_RS02230 0.60 +0.1
653,604 - ABI39_RS02230 0.60 +0.5
653,624 - ABI39_RS02230 0.61 +0.2
653,650 + ABI39_RS02230 0.62 +0.5
653,651 - ABI39_RS02230 0.62 -0.1
653,659 - ABI39_RS02230 0.62 -0.3
653,679 + ABI39_RS02230 0.63 -0.2
653,679 + ABI39_RS02230 0.63 +1.0
653,716 + ABI39_RS02230 0.64 -0.2
653,815 + ABI39_RS02230 0.68 +0.2
653,862 + ABI39_RS02230 0.70 +0.4
653,917 - ABI39_RS02230 0.72 -0.2
653,917 - ABI39_RS02230 0.72 +0.4
654,060 - ABI39_RS02230 0.77 +0.1
654,272 + ABI39_RS02230 0.84 -0.8
654,273 - ABI39_RS02230 0.84 -0.3
654,276 - ABI39_RS02230 0.84 +0.4
654,335 + ABI39_RS02230 0.86 +0.5
654,451 - -0.1
654,451 - +0.0
654,506 - -0.1
654,514 + +0.4
654,926 + ABI39_RS02235 0.38 -0.3
654,928 - ABI39_RS02235 0.38 +0.7
654,930 - ABI39_RS02235 0.39 +0.1
654,970 + ABI39_RS02235 0.47 -1.1
654,991 - ABI39_RS02235 0.51 +0.1
655,110 + ABI39_RS02235 0.75 -0.2
655,152 + ABI39_RS02235 0.83 -0.1
655,251 - -0.3
655,275 - +0.9
655,324 - +0.1
655,373 + +0.4
655,392 + -0.8
655,392 + +0.4
655,434 + ABI39_RS02240 0.14 -0.2
655,435 - ABI39_RS02240 0.14 -0.1
655,490 + ABI39_RS02240 0.22 -0.4
655,490 + ABI39_RS02240 0.22 +1.3
655,506 + ABI39_RS02240 0.24 +0.0
655,577 + ABI39_RS02240 0.33 +1.3
655,582 - ABI39_RS02240 0.34 +0.4
655,696 + ABI39_RS02240 0.48 +0.8

Or see this region's nucleotide sequence