Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS01170

Experiment: Glycogen; filtered 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABI39_RS01165 and ABI39_RS01170 are separated by 117 nucleotidesABI39_RS01170 and ABI39_RS01175 are separated by 17 nucleotidesABI39_RS01175 and ABI39_RS01180 are separated by 26 nucleotides ABI39_RS01165: ABI39_RS01165 - helix-turn-helix transcriptional regulator, at 368,476 to 369,336 _RS01165 ABI39_RS01170: ABI39_RS01170 - aldo/keto reductase, at 369,454 to 370,386 _RS01170 ABI39_RS01175: ABI39_RS01175 - L-galacto-1,5-lactonase LgaB, at 370,404 to 371,327 _RS01175 ABI39_RS01180: ABI39_RS01180 - L-fucose:H+ symporter permease, at 371,354 to 372,613 _RS01180 Position (kb) 369 370 371Strain fitness (log2 ratio) -1 0 1 2at 368.504 kb on + strandat 368.505 kb on - strandat 368.585 kb on - strand, within ABI39_RS01165at 368.585 kb on - strand, within ABI39_RS01165at 368.589 kb on + strand, within ABI39_RS01165at 368.590 kb on - strand, within ABI39_RS01165at 368.590 kb on - strand, within ABI39_RS01165at 368.640 kb on - strand, within ABI39_RS01165at 368.654 kb on + strand, within ABI39_RS01165at 368.657 kb on - strand, within ABI39_RS01165at 368.683 kb on - strand, within ABI39_RS01165at 368.714 kb on - strand, within ABI39_RS01165at 368.716 kb on + strand, within ABI39_RS01165at 368.725 kb on - strand, within ABI39_RS01165at 368.725 kb on - strand, within ABI39_RS01165at 368.727 kb on - strand, within ABI39_RS01165at 368.729 kb on - strand, within ABI39_RS01165at 368.808 kb on - strand, within ABI39_RS01165at 368.817 kb on + strand, within ABI39_RS01165at 368.818 kb on - strand, within ABI39_RS01165at 368.818 kb on - strand, within ABI39_RS01165at 368.835 kb on - strand, within ABI39_RS01165at 368.958 kb on - strand, within ABI39_RS01165at 368.960 kb on + strand, within ABI39_RS01165at 368.961 kb on - strand, within ABI39_RS01165at 368.961 kb on - strand, within ABI39_RS01165at 368.961 kb on - strand, within ABI39_RS01165at 369.063 kb on + strand, within ABI39_RS01165at 369.064 kb on - strand, within ABI39_RS01165at 369.164 kb on - strand, within ABI39_RS01165at 369.165 kb on + strand, within ABI39_RS01165at 369.198 kb on - strand, within ABI39_RS01165at 369.233 kb on + strand, within ABI39_RS01165at 369.234 kb on - strand, within ABI39_RS01165at 369.238 kb on + strand, within ABI39_RS01165at 369.250 kb on + strand, within ABI39_RS01165at 369.398 kb on + strandat 369.682 kb on + strand, within ABI39_RS01170at 369.801 kb on + strand, within ABI39_RS01170at 369.802 kb on - strand, within ABI39_RS01170at 369.819 kb on - strand, within ABI39_RS01170at 369.828 kb on - strand, within ABI39_RS01170at 369.867 kb on - strand, within ABI39_RS01170at 369.911 kb on + strand, within ABI39_RS01170at 369.911 kb on + strand, within ABI39_RS01170at 369.912 kb on - strand, within ABI39_RS01170at 369.912 kb on - strand, within ABI39_RS01170at 369.976 kb on + strand, within ABI39_RS01170at 370.220 kb on - strand, within ABI39_RS01170at 370.275 kb on + strand, within ABI39_RS01170at 370.275 kb on + strand, within ABI39_RS01170at 370.290 kb on + strand, within ABI39_RS01170at 370.297 kb on + strandat 370.377 kb on + strandat 370.418 kb on - strandat 370.508 kb on + strand, within ABI39_RS01175at 370.590 kb on + strand, within ABI39_RS01175at 370.601 kb on - strand, within ABI39_RS01175at 370.700 kb on + strand, within ABI39_RS01175at 370.747 kb on + strand, within ABI39_RS01175at 370.851 kb on + strand, within ABI39_RS01175at 371.180 kb on + strand, within ABI39_RS01175at 371.181 kb on - strand, within ABI39_RS01175at 371.197 kb on - strand, within ABI39_RS01175at 371.304 kb on + strandat 371.305 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycogen; filtered 2.5 mg/ml (C)
remove
368,504 + +0.3
368,505 - +0.2
368,585 - ABI39_RS01165 0.13 +0.1
368,585 - ABI39_RS01165 0.13 +0.2
368,589 + ABI39_RS01165 0.13 -0.4
368,590 - ABI39_RS01165 0.13 +0.5
368,590 - ABI39_RS01165 0.13 +0.4
368,640 - ABI39_RS01165 0.19 -0.9
368,654 + ABI39_RS01165 0.21 -0.4
368,657 - ABI39_RS01165 0.21 -0.7
368,683 - ABI39_RS01165 0.24 +0.3
368,714 - ABI39_RS01165 0.28 -0.2
368,716 + ABI39_RS01165 0.28 +0.6
368,725 - ABI39_RS01165 0.29 -0.0
368,725 - ABI39_RS01165 0.29 +1.4
368,727 - ABI39_RS01165 0.29 +0.6
368,729 - ABI39_RS01165 0.29 -0.2
368,808 - ABI39_RS01165 0.39 -0.5
368,817 + ABI39_RS01165 0.40 -0.4
368,818 - ABI39_RS01165 0.40 -0.2
368,818 - ABI39_RS01165 0.40 +0.2
368,835 - ABI39_RS01165 0.42 +0.3
368,958 - ABI39_RS01165 0.56 +2.3
368,960 + ABI39_RS01165 0.56 -1.3
368,961 - ABI39_RS01165 0.56 -0.4
368,961 - ABI39_RS01165 0.56 +0.2
368,961 - ABI39_RS01165 0.56 +0.2
369,063 + ABI39_RS01165 0.68 +0.6
369,064 - ABI39_RS01165 0.68 -0.0
369,164 - ABI39_RS01165 0.80 -0.0
369,165 + ABI39_RS01165 0.80 +0.3
369,198 - ABI39_RS01165 0.84 -0.1
369,233 + ABI39_RS01165 0.88 +0.4
369,234 - ABI39_RS01165 0.88 +0.2
369,238 + ABI39_RS01165 0.89 +0.5
369,250 + ABI39_RS01165 0.90 +0.4
369,398 + -0.1
369,682 + ABI39_RS01170 0.24 +0.2
369,801 + ABI39_RS01170 0.37 +0.6
369,802 - ABI39_RS01170 0.37 +0.7
369,819 - ABI39_RS01170 0.39 -0.0
369,828 - ABI39_RS01170 0.40 -0.3
369,867 - ABI39_RS01170 0.44 +0.2
369,911 + ABI39_RS01170 0.49 +0.6
369,911 + ABI39_RS01170 0.49 +0.7
369,912 - ABI39_RS01170 0.49 -0.2
369,912 - ABI39_RS01170 0.49 -0.1
369,976 + ABI39_RS01170 0.56 +0.0
370,220 - ABI39_RS01170 0.82 +0.1
370,275 + ABI39_RS01170 0.88 -0.3
370,275 + ABI39_RS01170 0.88 -0.5
370,290 + ABI39_RS01170 0.90 +0.3
370,297 + +0.5
370,377 + -0.2
370,418 - +0.5
370,508 + ABI39_RS01175 0.11 -0.1
370,590 + ABI39_RS01175 0.20 -1.1
370,601 - ABI39_RS01175 0.21 -0.5
370,700 + ABI39_RS01175 0.32 -0.8
370,747 + ABI39_RS01175 0.37 +0.8
370,851 + ABI39_RS01175 0.48 -0.4
371,180 + ABI39_RS01175 0.84 -0.3
371,181 - ABI39_RS01175 0.84 -0.1
371,197 - ABI39_RS01175 0.86 -0.5
371,304 + -0.3
371,305 - +0.1

Or see this region's nucleotide sequence