Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10925

Experiment: Glycogen; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycogen; autoclaved 2.5 mg/ml (C)
2,924,575	+		ABI39_RS10920	0.28	-0.4
2,924,610	+		ABI39_RS10920	0.32	-0.4
2,924,611	-		ABI39_RS10920	0.32	+2.4
2,924,611	-		ABI39_RS10920	0.32	-0.3
2,924,681	+		ABI39_RS10920	0.38	+0.2
2,924,723	+		ABI39_RS10920	0.42	-1.1
2,924,723	+		ABI39_RS10920	0.42	-0.9
2,924,778	+		ABI39_RS10920	0.46	-1.1
2,924,847	+		ABI39_RS10920	0.52	+0.3
2,924,933	+		ABI39_RS10920	0.60	-1.4
2,925,035	-		ABI39_RS10920	0.69	-1.6
2,925,168	-		ABI39_RS10920	0.81	-0.3
2,925,379	+				-0.1
2,925,383	+				-0.6
2,925,383	+				-1.3
2,925,388	+				-0.5
2,925,389	-				-1.6
2,925,389	-				-0.1
2,925,398	+				-0.3
2,925,510	+				-0.6
2,925,567	+				-0.1
2,925,568	-				-0.2
2,925,568	-				+0.4
2,925,579	-				-0.2
2,925,588	-				+0.9
2,925,697	-				-0.0
2,925,921	+				-0.5
2,925,979	-		ABI39_RS10925	0.10	-0.8
2,925,984	+		ABI39_RS10925	0.11	-1.0
2,925,984	+		ABI39_RS10925	0.11	+0.4
2,925,987	-		ABI39_RS10925	0.11	-0.4
2,926,134	-		ABI39_RS10925	0.14	-0.7
2,926,149	-		ABI39_RS10925	0.15	-0.1
2,926,149	-		ABI39_RS10925	0.15	-0.0
2,926,153	+		ABI39_RS10925	0.15	-0.8
2,926,153	+		ABI39_RS10925	0.15	+0.2
2,926,154	-		ABI39_RS10925	0.15	+0.3
2,926,255	-		ABI39_RS10925	0.17	+1.0
2,926,279	-		ABI39_RS10925	0.18	+0.4
2,926,336	+		ABI39_RS10925	0.19	+0.2
2,926,350	-		ABI39_RS10925	0.20	+0.3
2,926,379	+		ABI39_RS10925	0.21	-0.6
2,926,400	-		ABI39_RS10925	0.21	-0.1
2,926,401	+		ABI39_RS10925	0.21	-0.2
2,926,402	-		ABI39_RS10925	0.21	+0.1
2,926,486	+		ABI39_RS10925	0.23	+0.2
2,926,491	+		ABI39_RS10925	0.23	+0.1
2,926,491	+		ABI39_RS10925	0.23	-0.2
2,926,493	+		ABI39_RS10925	0.23	-0.3
2,926,571	-		ABI39_RS10925	0.25	-0.2
2,926,856	+		ABI39_RS10925	0.33	-0.8
2,926,899	+		ABI39_RS10925	0.34	+0.7
2,926,932	+		ABI39_RS10925	0.35	+0.9
2,926,995	+		ABI39_RS10925	0.36	+0.4
2,926,999	-		ABI39_RS10925	0.36	-0.3
2,926,999	-		ABI39_RS10925	0.36	+0.8
2,927,107	-		ABI39_RS10925	0.39	-0.9
2,927,141	-		ABI39_RS10925	0.40	-0.2
2,927,141	-		ABI39_RS10925	0.40	+0.5
2,927,277	+		ABI39_RS10925	0.43	+1.4
2,927,277	+		ABI39_RS10925	0.43	+0.7
2,927,328	+		ABI39_RS10925	0.45	-0.0
2,927,328	+		ABI39_RS10925	0.45	+0.2
2,927,367	+		ABI39_RS10925	0.46	-1.6
2,927,400	-		ABI39_RS10925	0.46	-1.0
2,927,461	-		ABI39_RS10925	0.48	-0.3
2,927,464	-		ABI39_RS10925	0.48	-0.8
2,927,465	+		ABI39_RS10925	0.48	-0.8
2,927,466	-		ABI39_RS10925	0.48	-0.3
2,927,466	-		ABI39_RS10925	0.48	+0.6
2,927,493	+		ABI39_RS10925	0.49	+0.3
2,927,666	+		ABI39_RS10925	0.53	+0.1
2,927,731	+		ABI39_RS10925	0.55	+0.5
2,927,733	+		ABI39_RS10925	0.55	+0.0
2,927,799	-		ABI39_RS10925	0.56	+0.1
2,927,861	+		ABI39_RS10925	0.58	+0.9
2,927,862	-		ABI39_RS10925	0.58	-0.5
2,927,877	-		ABI39_RS10925	0.58	-0.8
2,927,877	-		ABI39_RS10925	0.58	-0.2
2,927,890	+		ABI39_RS10925	0.59	+0.5
2,927,899	+		ABI39_RS10925	0.59	+0.3
2,927,906	+		ABI39_RS10925	0.59	+0.3
2,927,938	+		ABI39_RS10925	0.60	-0.3
2,928,064	-		ABI39_RS10925	0.63	-0.2
2,928,120	-		ABI39_RS10925	0.65	-0.5
2,928,150	-		ABI39_RS10925	0.65	-0.3
2,928,163	-		ABI39_RS10925	0.66	+0.4
2,928,194	+		ABI39_RS10925	0.66	+0.2
2,928,195	-		ABI39_RS10925	0.66	+0.0
2,928,264	-		ABI39_RS10925	0.68	+0.1
2,928,264	-		ABI39_RS10925	0.68	+1.0
2,928,266	+		ABI39_RS10925	0.68	+0.1
2,928,267	-		ABI39_RS10925	0.68	-0.2
2,928,342	+		ABI39_RS10925	0.70	+0.6
2,928,343	-		ABI39_RS10925	0.70	-0.6
2,928,384	+		ABI39_RS10925	0.71	+0.7
2,928,409	-		ABI39_RS10925	0.72	+0.1
2,928,425	-		ABI39_RS10925	0.72	+0.4
2,928,454	-		ABI39_RS10925	0.73	+0.1
2,928,454	-		ABI39_RS10925	0.73	-0.4
2,928,454	-		ABI39_RS10925	0.73	+1.1
2,928,533	+		ABI39_RS10925	0.75	-0.7
2,928,539	-		ABI39_RS10925	0.75	+0.6
2,928,539	-		ABI39_RS10925	0.75	-0.1
2,928,540	+		ABI39_RS10925	0.75	+0.3
2,928,717	+		ABI39_RS10925	0.80	-0.2
2,928,911	+		ABI39_RS10925	0.85	-1.0
2,928,926	+		ABI39_RS10925	0.85	-0.0
2,928,927	-		ABI39_RS10925	0.85	+0.2
2,928,956	+		ABI39_RS10925	0.86	-0.4
2,928,985	+		ABI39_RS10925	0.86	+0.2
2,928,986	-		ABI39_RS10925	0.87	+0.1
2,928,993	+		ABI39_RS10925	0.87	+0.2
2,929,050	+		ABI39_RS10925	0.88	+0.3
2,929,069	+		ABI39_RS10925	0.89	+0.2
2,929,185	+				-2.3
2,929,294	-				+0.7
2,929,294	-				-0.3
2,929,358	+				-0.2
2,929,358	-				+0.9
2,929,413	+				-0.8
2,929,432	+				+0.4
2,929,464	+				+0.1
2,929,539	-				+0.1
2,929,596	+				-0.7
2,929,597	-				+0.4
2,929,599	+				-0.1
2,929,689	+				-0.7
2,929,711	-				-0.2
2,929,717	+				-1.0
2,929,717	+				+0.1
2,929,751	+				-0.4
2,929,752	-				+0.1
2,929,762	-				-0.1
2,929,831	-				+0.7
2,929,851	+				-0.0
2,929,902	+				+2.2
2,929,924	-				+0.1
2,930,051	+				+0.5
2,930,055	+				-0.8
2,930,143	+		ABI39_RS10930	0.10	-1.2
2,930,145	+		ABI39_RS10930	0.10	+0.1
2,930,191	-		ABI39_RS10930	0.12	+0.3
2,930,197	-		ABI39_RS10930	0.12	+0.3
2,930,377	-		ABI39_RS10930	0.18	+0.3
2,930,454	+		ABI39_RS10930	0.21	+2.0
2,930,454	+		ABI39_RS10930	0.21	-0.2
2,930,455	-		ABI39_RS10930	0.21	-0.3
2,930,455	-		ABI39_RS10930	0.21	-0.3
2,930,456	+		ABI39_RS10930	0.21	+0.2
2,930,456	+		ABI39_RS10930	0.21	+0.1
2,930,492	-		ABI39_RS10930	0.22	+1.0