Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS17945 and ABI39_RS17950 are separated by 161 nucleotides ABI39_RS17950 and ABI39_RS22835 are separated by 131 nucleotides ABI39_RS22835 and ABI39_RS17955 are separated by 32 nucleotides ABI39_RS17955 and ABI39_RS17960 are separated by 162 nucleotides
ABI39_RS17945: ABI39_RS17945 - glutamine synthetase III, at 4,525,763 to 4,527,952
_RS17945
ABI39_RS17950: ABI39_RS17950 - Crp/Fnr family transcriptional regulator, at 4,528,114 to 4,528,815
_RS17950
ABI39_RS22835: ABI39_RS22835 - hypothetical protein, at 4,528,947 to 4,529,099
_RS22835
ABI39_RS17955: ABI39_RS17955 - ferritin, at 4,529,132 to 4,529,644
_RS17955
ABI39_RS17960: ABI39_RS17960 - 3-deoxy-8-phosphooctulonate synthase, at 4,529,807 to 4,530,604
_RS17960
Position (kb) 4528
4529
4530 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4527.976 kb on + strand at 4528.023 kb on + strand at 4528.130 kb on + strand at 4528.156 kb on - strand at 4528.166 kb on + strand at 4528.179 kb on - strand at 4528.250 kb on - strand, within ABI39_RS17950 at 4528.278 kb on + strand, within ABI39_RS17950 at 4528.615 kb on - strand, within ABI39_RS17950 at 4528.642 kb on - strand, within ABI39_RS17950 at 4528.683 kb on - strand, within ABI39_RS17950 at 4528.695 kb on + strand, within ABI39_RS17950 at 4528.893 kb on + strand at 4528.919 kb on + strand at 4528.959 kb on - strand at 4528.983 kb on - strand, within ABI39_RS22835 at 4528.987 kb on + strand, within ABI39_RS22835 at 4529.016 kb on + strand, within ABI39_RS22835 at 4529.081 kb on + strand, within ABI39_RS22835 at 4529.082 kb on - strand, within ABI39_RS22835 at 4529.101 kb on + strand at 4529.284 kb on - strand, within ABI39_RS17955 at 4529.486 kb on + strand, within ABI39_RS17955 at 4529.554 kb on + strand, within ABI39_RS17955 at 4529.554 kb on + strand, within ABI39_RS17955 at 4529.555 kb on - strand, within ABI39_RS17955 at 4529.628 kb on - strand at 4529.630 kb on - strand at 4529.630 kb on - strand at 4529.730 kb on - strand at 4529.734 kb on + strand at 4529.735 kb on - strand at 4529.780 kb on + strand at 4529.780 kb on + strand at 4529.809 kb on - strand at 4529.811 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) remove 4,527,976 + -3.4 4,528,023 + -3.0 4,528,130 + -0.9 4,528,156 - -2.1 4,528,166 + +1.3 4,528,179 - +1.6 4,528,250 - ABI39_RS17950 0.19 -1.1 4,528,278 + ABI39_RS17950 0.23 -1.6 4,528,615 - ABI39_RS17950 0.71 -0.6 4,528,642 - ABI39_RS17950 0.75 -0.6 4,528,683 - ABI39_RS17950 0.81 -2.3 4,528,695 + ABI39_RS17950 0.83 -1.9 4,528,893 + -1.8 4,528,919 + -1.4 4,528,959 - +0.9 4,528,983 - ABI39_RS22835 0.24 -0.9 4,528,987 + ABI39_RS22835 0.26 +0.3 4,529,016 + ABI39_RS22835 0.45 +0.4 4,529,081 + ABI39_RS22835 0.88 -1.0 4,529,082 - ABI39_RS22835 0.88 -1.6 4,529,101 + +0.8 4,529,284 - ABI39_RS17955 0.30 +0.6 4,529,486 + ABI39_RS17955 0.69 -1.9 4,529,554 + ABI39_RS17955 0.82 -1.4 4,529,554 + ABI39_RS17955 0.82 -0.4 4,529,555 - ABI39_RS17955 0.82 -0.7 4,529,628 - +0.3 4,529,630 - +0.6 4,529,630 - -1.4 4,529,730 - -0.7 4,529,734 + +1.9 4,529,735 - -1.2 4,529,780 + -0.5 4,529,780 + -1.8 4,529,809 - +0.7 4,529,811 - +0.3
Or see this region's nucleotide sequence