Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20665

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
5,092,786	+		ABI39_RS20660	0.70	-3.9
5,092,806	-		ABI39_RS20660	0.71	-1.4
5,092,836	+		ABI39_RS20660	0.72	-0.6
5,092,939	-		ABI39_RS20660	0.77	-0.3
5,092,967	+		ABI39_RS20660	0.78	-0.9
5,092,968	-		ABI39_RS20660	0.78	-0.1
5,092,970	+		ABI39_RS20660	0.78	+0.9
5,093,052	+		ABI39_RS20660	0.82	-0.3
5,093,052	+		ABI39_RS20660	0.82	-4.9
5,093,099	-		ABI39_RS20660	0.84	-1.1
5,093,138	+		ABI39_RS20660	0.85	-1.2
5,093,147	+		ABI39_RS20660	0.86	-0.1
5,093,177	+		ABI39_RS20660	0.87	+0.0
5,093,178	-		ABI39_RS20660	0.87	-1.1
5,093,183	+		ABI39_RS20660	0.87	-3.9
5,093,287	-				+0.7
5,093,353	+				+1.6
5,093,454	+				-1.7
5,093,462	+				+0.8
5,093,596	+				-0.8
5,093,642	-				+0.2
5,093,642	-				-1.3
5,093,704	-				-0.6
5,093,828	-				+0.3
5,093,842	-				-3.1
5,094,127	+		ABI39_RS20665	0.15	-2.4
5,094,219	-		ABI39_RS20665	0.18	+0.5
5,094,387	-		ABI39_RS20665	0.23	-0.5
5,094,471	-		ABI39_RS20665	0.25	-3.5
5,094,643	+		ABI39_RS20665	0.31	+0.3
5,094,722	+		ABI39_RS20665	0.33	-1.9
5,094,784	-		ABI39_RS20665	0.35	+1.2
5,095,041	+		ABI39_RS20665	0.43	+0.1
5,095,042	-		ABI39_RS20665	0.43	-0.9
5,095,042	-		ABI39_RS20665	0.43	+1.4
5,095,073	+		ABI39_RS20665	0.44	-0.1
5,095,253	+		ABI39_RS20665	0.50	+0.9
5,095,838	+		ABI39_RS20665	0.68	+0.8
5,096,200	+		ABI39_RS20665	0.79	+0.3
5,096,214	+		ABI39_RS20665	0.79	+0.3
5,096,464	+		ABI39_RS20665	0.87	-0.2
5,096,489	-		ABI39_RS20665	0.88	-0.4
5,096,693	+				+0.2
5,096,848	+				+1.1
5,096,908	-				-1.1
5,097,072	-		ABI39_RS20670	0.16	-0.2
5,097,077	+		ABI39_RS20670	0.16	+1.1
5,097,077	+		ABI39_RS20670	0.16	+0.2
5,097,078	-		ABI39_RS20670	0.16	-0.4
5,097,237	-		ABI39_RS20670	0.31	-0.8
5,097,410	+		ABI39_RS20670	0.47	-1.2
5,097,411	-		ABI39_RS20670	0.47	+0.9
5,097,506	-		ABI39_RS20670	0.56	-1.0
5,097,796	+		ABI39_RS20670	0.83	-1.1