Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS18310

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
4,615,454	+				+0.8
4,615,473	-				+1.0
4,615,476	+				-0.2
4,615,485	+				+0.5
4,615,501	-				-2.6
4,615,554	-				+0.3
4,615,692	+				+0.8
4,615,756	-				-0.1
4,615,775	-				+0.9
4,615,775	-				-1.8
4,615,851	+		ABI39_RS18305	0.16	+0.6
4,615,914	+		ABI39_RS18305	0.24	-5.0
4,616,026	+		ABI39_RS18305	0.38	-3.2
4,616,026	+		ABI39_RS18305	0.38	+0.5
4,616,160	+		ABI39_RS18305	0.56	+0.7
4,616,161	-		ABI39_RS18305	0.56	+1.0
4,616,163	+		ABI39_RS18305	0.56	-0.3
4,616,244	-		ABI39_RS18305	0.67	-0.5
4,616,371	-		ABI39_RS18305	0.83	-3.5
4,616,435	-				-0.9
4,616,448	+				-1.5
4,616,548	+		ABI39_RS18310	0.27	-1.1
4,616,824	-				-1.7
4,616,861	+				-3.8
4,616,864	+				+1.1
4,616,947	-				-1.0
4,617,136	-				-0.1
4,617,147	+				+0.8
4,617,351	-				-0.3
4,617,352	+				+0.6
4,617,352	+				+1.0
4,617,353	-				+1.1
4,617,357	-				+0.3
4,617,357	-				-2.6
4,617,358	+				+0.9
4,617,363	-				+0.5
4,617,367	-				-0.1
4,617,385	-				+0.1
4,617,399	-				-1.4
4,617,399	-				-0.3
4,617,565	+				+0.6
4,617,642	-				-0.6
4,617,657	-				-1.6
4,617,657	-				-3.3
4,617,718	+				+0.1
4,617,776	+				-0.7
4,617,777	-				-2.4