Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS15780 and ABI39_RS15785 overlap by 16 nucleotides ABI39_RS15785 and ABI39_RS23100 overlap by 4 nucleotides ABI39_RS23100 and ABI39_RS15790 overlap by 17 nucleotides ABI39_RS15790 and ABI39_RS15795 are separated by 4 nucleotides
ABI39_RS15780: ABI39_RS15780 - hypothetical protein, at 4,067,713 to 4,067,907
_RS15780
ABI39_RS15785: ABI39_RS15785 - recombination protein NinG, at 4,067,892 to 4,068,371
_RS15785
ABI39_RS23100: ABI39_RS23100 - hypothetical protein, at 4,068,368 to 4,068,544
_RS23100
ABI39_RS15790: ABI39_RS15790 - DEAD/DEAH box helicase, at 4,068,528 to 4,069,697
_RS15790
ABI39_RS15795: ABI39_RS15795 - hypothetical protein, at 4,069,702 to 4,070,715
_RS15795
ABI39_RS15800: ABI39_RS15800 - hypothetical protein, at 4,070,690 to 4,071,271
_RS15800
Position (kb) 4068
4069
4070 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4067.557 kb on - strand at 4067.573 kb on - strand at 4067.627 kb on - strand at 4067.702 kb on - strand at 4067.713 kb on - strand at 4067.803 kb on - strand, within ABI39_RS15780 at 4067.847 kb on - strand, within ABI39_RS15780 at 4067.892 kb on - strand at 4067.892 kb on - strand at 4068.459 kb on - strand, within ABI39_RS23100 at 4068.461 kb on - strand, within ABI39_RS23100 at 4068.488 kb on - strand, within ABI39_RS23100 at 4068.523 kb on + strand, within ABI39_RS23100 at 4068.713 kb on - strand, within ABI39_RS15790 at 4068.736 kb on + strand, within ABI39_RS15790 at 4068.764 kb on + strand, within ABI39_RS15790 at 4068.913 kb on - strand, within ABI39_RS15790 at 4068.942 kb on - strand, within ABI39_RS15790 at 4069.061 kb on - strand, within ABI39_RS15790 at 4069.427 kb on - strand, within ABI39_RS15790 at 4069.431 kb on - strand, within ABI39_RS15790 at 4069.441 kb on - strand, within ABI39_RS15790 at 4069.442 kb on - strand, within ABI39_RS15790 at 4069.497 kb on - strand, within ABI39_RS15790 at 4069.679 kb on - strand at 4069.973 kb on + strand, within ABI39_RS15795 at 4069.973 kb on + strand, within ABI39_RS15795 at 4070.017 kb on - strand, within ABI39_RS15795 at 4070.029 kb on + strand, within ABI39_RS15795 at 4070.031 kb on + strand, within ABI39_RS15795 at 4070.228 kb on - strand, within ABI39_RS15795 at 4070.230 kb on - strand, within ABI39_RS15795 at 4070.231 kb on + strand, within ABI39_RS15795 at 4070.231 kb on + strand, within ABI39_RS15795 at 4070.232 kb on - strand, within ABI39_RS15795 at 4070.232 kb on - strand, within ABI39_RS15795 at 4070.232 kb on - strand, within ABI39_RS15795 at 4070.236 kb on - strand, within ABI39_RS15795 at 4070.244 kb on - strand, within ABI39_RS15795 at 4070.350 kb on - strand, within ABI39_RS15795 at 4070.575 kb on + strand, within ABI39_RS15795 at 4070.577 kb on + strand, within ABI39_RS15795
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) remove 4,067,557 - -2.9 4,067,573 - -1.7 4,067,627 - +1.5 4,067,702 - -2.7 4,067,713 - -2.5 4,067,803 - ABI39_RS15780 0.46 -0.4 4,067,847 - ABI39_RS15780 0.69 -3.0 4,067,892 - +1.5 4,067,892 - -2.6 4,068,459 - ABI39_RS23100 0.51 +0.1 4,068,461 - ABI39_RS23100 0.53 -1.6 4,068,488 - ABI39_RS23100 0.68 +1.3 4,068,523 + ABI39_RS23100 0.88 +4.5 4,068,713 - ABI39_RS15790 0.16 -0.3 4,068,736 + ABI39_RS15790 0.18 -0.4 4,068,764 + ABI39_RS15790 0.20 -2.0 4,068,913 - ABI39_RS15790 0.33 +1.3 4,068,942 - ABI39_RS15790 0.35 -0.9 4,069,061 - ABI39_RS15790 0.46 -2.6 4,069,427 - ABI39_RS15790 0.77 +1.5 4,069,431 - ABI39_RS15790 0.77 -3.3 4,069,441 - ABI39_RS15790 0.78 -0.6 4,069,442 - ABI39_RS15790 0.78 +0.9 4,069,497 - ABI39_RS15790 0.83 +0.9 4,069,679 - -4.0 4,069,973 + ABI39_RS15795 0.27 -0.9 4,069,973 + ABI39_RS15795 0.27 -2.3 4,070,017 - ABI39_RS15795 0.31 -1.8 4,070,029 + ABI39_RS15795 0.32 -2.2 4,070,031 + ABI39_RS15795 0.32 -0.9 4,070,228 - ABI39_RS15795 0.52 -0.9 4,070,230 - ABI39_RS15795 0.52 -3.5 4,070,231 + ABI39_RS15795 0.52 +3.0 4,070,231 + ABI39_RS15795 0.52 -0.5 4,070,232 - ABI39_RS15795 0.52 -0.6 4,070,232 - ABI39_RS15795 0.52 -3.9 4,070,232 - ABI39_RS15795 0.52 -2.2 4,070,236 - ABI39_RS15795 0.53 +1.9 4,070,244 - ABI39_RS15795 0.53 +0.8 4,070,350 - ABI39_RS15795 0.64 -1.6 4,070,575 + ABI39_RS15795 0.86 +0.3 4,070,577 + ABI39_RS15795 0.86 +1.0
Or see this region's nucleotide sequence