Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS15590

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
4,031,528	-		ABI39_RS15580	0.87	+0.3
4,031,532	+		ABI39_RS15580	0.87	-0.2
4,031,541	+		ABI39_RS15580	0.87	+0.1
4,031,542	-		ABI39_RS15580	0.87	+0.3
4,031,545	-		ABI39_RS15580	0.88	+1.1
4,031,614	+				-0.5
4,031,615	-				+0.0
4,031,615	-				-0.2
4,031,637	-				+1.3
4,031,686	+				+0.9
4,031,738	-				+0.9
4,031,745	-				-0.8
4,031,873	+				-3.8
4,031,881	-				-4.6
4,032,017	+				+0.4
4,032,230	+				+1.1
4,032,258	-				-0.3
4,032,258	-				+1.5
4,032,387	+		ABI39_RS15585	0.60	+0.9
4,032,562	-		ABI39_RS15590	0.11	-0.2
4,032,608	+		ABI39_RS15590	0.20	-3.6
4,032,803	+		ABI39_RS15590	0.55	-0.4
4,032,808	-		ABI39_RS15590	0.56	+0.5
4,032,822	-		ABI39_RS15590	0.58	+0.1
4,032,847	+		ABI39_RS15590	0.63	+0.4
4,032,897	+		ABI39_RS15590	0.72	-2.9
4,032,898	-		ABI39_RS15590	0.72	-2.2
4,032,901	+		ABI39_RS15590	0.72	+1.8
4,032,928	+		ABI39_RS15590	0.77	-0.7
4,032,929	-		ABI39_RS15590	0.77	-0.7
4,032,929	-		ABI39_RS15590	0.77	-3.5
4,033,213	-				+1.4
4,033,228	+				+0.4
4,033,253	-		ABI39_RS15595	0.11	+0.9
4,033,320	-		ABI39_RS15595	0.15	-0.8
4,033,323	+		ABI39_RS15595	0.15	+0.2
4,033,332	+		ABI39_RS15595	0.15	-3.7
4,033,348	+		ABI39_RS15595	0.16	+0.2
4,033,349	-		ABI39_RS15595	0.16	-4.6
4,033,397	-		ABI39_RS15595	0.19	+0.8
4,033,397	-		ABI39_RS15595	0.19	-3.8
4,033,451	+		ABI39_RS15595	0.22	-0.1
4,033,467	-		ABI39_RS15595	0.23	-0.1
4,033,566	+		ABI39_RS15595	0.29	+0.1
4,033,579	-		ABI39_RS15595	0.30	-2.8
4,033,691	-		ABI39_RS15595	0.36	+0.1
4,033,692	+		ABI39_RS15595	0.37	-0.5
4,033,693	-		ABI39_RS15595	0.37	+0.8
4,033,969	+		ABI39_RS15595	0.53	+0.1
4,033,970	-		ABI39_RS15595	0.53	-0.2
4,033,987	+		ABI39_RS15595	0.54	+0.0