Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS13235

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
3,442,575	+		ABI39_RS13230	0.61	+0.2
3,442,645	+		ABI39_RS13230	0.64	-2.7
3,442,646	-		ABI39_RS13230	0.64	-3.7
3,442,974	+		ABI39_RS13230	0.77	-0.3
3,442,975	-		ABI39_RS13230	0.78	+1.4
3,443,015	-		ABI39_RS13230	0.79	+0.5
3,443,129	-		ABI39_RS13230	0.84	+1.1
3,443,177	+		ABI39_RS13230	0.86	-0.8
3,443,232	+		ABI39_RS13230	0.88	-1.8
3,443,232	+		ABI39_RS13230	0.88	+0.0
3,443,233	-		ABI39_RS13230	0.88	+0.2
3,443,393	+				-0.8
3,443,393	+				-2.4
3,443,394	-				-1.8
3,443,424	+				-0.3
3,443,509	-				+1.1
3,443,509	-				-2.8
3,443,518	+				+0.7
3,443,519	-				-0.4
3,443,519	-				+0.1
3,443,590	-				-2.5
3,443,635	+				-0.3
3,443,636	-				+0.3
3,443,819	+		ABI39_RS13235	0.21	-4.0
3,443,822	-		ABI39_RS13235	0.21	-3.3
3,443,822	-		ABI39_RS13235	0.21	+0.8
3,443,872	-		ABI39_RS13235	0.25	-3.6
3,443,886	-		ABI39_RS13235	0.26	-0.0
3,443,908	+		ABI39_RS13235	0.28	-3.4
3,443,909	-		ABI39_RS13235	0.28	-2.4
3,443,965	+		ABI39_RS13235	0.33	-4.1
3,443,966	-		ABI39_RS13235	0.33	+0.3
3,444,074	-		ABI39_RS13235	0.42	-0.7
3,444,115	-		ABI39_RS13235	0.45	-3.5
3,444,125	-		ABI39_RS13235	0.46	+0.7
3,444,188	-		ABI39_RS13235	0.51	+0.0
3,444,285	+		ABI39_RS13235	0.59	+1.2
3,444,286	-		ABI39_RS13235	0.60	+0.1
3,444,323	+		ABI39_RS13235	0.63	-0.6
3,444,323	+		ABI39_RS13235	0.63	-0.7
3,444,324	-		ABI39_RS13235	0.63	-2.4
3,444,324	-		ABI39_RS13235	0.63	-1.7
3,444,358	-		ABI39_RS13235	0.66	+0.9
3,444,369	+		ABI39_RS13235	0.66	-0.3
3,444,369	+		ABI39_RS13235	0.66	-1.0
3,444,370	-		ABI39_RS13235	0.67	+0.2
3,444,373	+		ABI39_RS13235	0.67	-1.1
3,444,527	-		ABI39_RS13235	0.80	-3.6
3,444,540	-		ABI39_RS13235	0.81	+1.5
3,444,616	+		ABI39_RS13235	0.87	-0.5
3,444,617	-		ABI39_RS13235	0.87	+0.6
3,444,687	+				-4.1
3,444,688	-				-0.2
3,444,688	-				+0.6
3,444,688	-				+0.2
3,444,940	+				-2.9
3,445,007	-				+0.7
3,445,007	-				+0.5
3,445,011	+				-3.7
3,445,012	-				-4.3
3,445,117	+		ABI39_RS13240	0.10	+0.0
3,445,197	-		ABI39_RS13240	0.16	-3.6
3,445,217	+		ABI39_RS13240	0.17	+1.3
3,445,218	-		ABI39_RS13240	0.17	+0.5
3,445,309	-		ABI39_RS13240	0.23	+1.4
3,445,326	+		ABI39_RS13240	0.24	-1.7
3,445,327	-		ABI39_RS13240	0.25	-2.8
3,445,350	+		ABI39_RS13240	0.26	+0.8
3,445,350	+		ABI39_RS13240	0.26	-3.0
3,445,384	-		ABI39_RS13240	0.28	+0.9
3,445,396	+		ABI39_RS13240	0.29	-0.5
3,445,397	-		ABI39_RS13240	0.29	-2.6
3,445,397	-		ABI39_RS13240	0.29	+0.8
3,445,536	-		ABI39_RS13240	0.39	-2.9
3,445,579	+		ABI39_RS13240	0.42	-3.8