Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09330

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
2,514,084	+		ABI39_RS09325	0.39	+1.4
2,514,126	+		ABI39_RS09325	0.42	+0.1
2,514,227	-		ABI39_RS09325	0.48	-4.0
2,514,335	-		ABI39_RS09325	0.55	-3.9
2,514,508	-		ABI39_RS09325	0.66	+0.3
2,514,546	+		ABI39_RS09325	0.69	-2.5
2,514,562	-		ABI39_RS09325	0.70	+0.7
2,514,631	-		ABI39_RS09325	0.74	-1.4
2,514,658	-		ABI39_RS09325	0.76	+2.4
2,514,671	-		ABI39_RS09325	0.77	+0.4
2,514,697	+		ABI39_RS09325	0.79	+1.0
2,514,697	+		ABI39_RS09325	0.79	-3.9
2,514,697	+		ABI39_RS09325	0.79	-0.0
2,514,698	-		ABI39_RS09325	0.79	-3.5
2,514,698	-		ABI39_RS09325	0.79	+0.5
2,514,798	+		ABI39_RS09325	0.85	-2.1
2,514,798	+		ABI39_RS09325	0.85	+0.3
2,514,856	-		ABI39_RS09325	0.89	+0.1
2,514,869	+		ABI39_RS09325	0.90	+0.9
2,514,885	-				-2.0
2,514,888	-				-0.1
2,514,888	-				+0.9
2,515,002	-				-0.8
2,515,077	+				-0.6
2,515,101	+				-0.1
2,515,125	+				+0.8
2,515,168	+				+0.3
2,515,231	+				-3.6
2,515,232	-				+2.0
2,515,267	-				-0.1
2,515,395	+		ABI39_RS09330	0.12	+0.4
2,515,400	-		ABI39_RS09330	0.12	+0.9
2,515,408	+		ABI39_RS09330	0.12	-1.7
2,515,448	-		ABI39_RS09330	0.13	+0.6
2,515,457	-		ABI39_RS09330	0.14	+0.8
2,515,504	+		ABI39_RS09330	0.15	+1.4
2,515,514	+		ABI39_RS09330	0.16	+0.7
2,515,514	+		ABI39_RS09330	0.16	-0.7
2,515,515	-		ABI39_RS09330	0.16	+1.2
2,515,526	-		ABI39_RS09330	0.16	-3.8
2,515,580	-		ABI39_RS09330	0.18	-1.2
2,515,617	+		ABI39_RS09330	0.19	-1.3
2,515,672	+		ABI39_RS09330	0.21	-2.8
2,515,673	-		ABI39_RS09330	0.21	+1.7
2,515,674	+		ABI39_RS09330	0.21	-2.1
2,515,674	+		ABI39_RS09330	0.21	-1.0
2,515,674	+		ABI39_RS09330	0.21	+0.1
2,515,674	+		ABI39_RS09330	0.21	-0.2
2,515,681	+		ABI39_RS09330	0.21	+1.5
2,515,681	+		ABI39_RS09330	0.21	+1.6
2,515,682	-		ABI39_RS09330	0.21	+1.4
2,515,682	-		ABI39_RS09330	0.21	-3.0
2,515,682	-		ABI39_RS09330	0.21	-0.0
2,515,787	+		ABI39_RS09330	0.25	-3.7
2,515,859	-		ABI39_RS09330	0.27	+0.2
2,515,982	-		ABI39_RS09330	0.32	-1.7
2,515,982	-		ABI39_RS09330	0.32	-5.0
2,516,127	+		ABI39_RS09330	0.36	-0.4
2,516,143	+		ABI39_RS09330	0.37	+1.2
2,516,204	-		ABI39_RS09330	0.39	-3.5
2,516,204	-		ABI39_RS09330	0.39	+0.9
2,516,420	+		ABI39_RS09330	0.46	+0.3
2,516,480	+		ABI39_RS09330	0.48	+0.4
2,516,481	-		ABI39_RS09330	0.48	-0.4
2,516,601	+		ABI39_RS09330	0.52	+0.6
2,516,647	+		ABI39_RS09330	0.54	-1.1
2,516,710	+		ABI39_RS09330	0.56	-4.2
2,516,786	+		ABI39_RS09330	0.59	-1.2
2,516,850	-		ABI39_RS09330	0.61	-0.2
2,516,894	+		ABI39_RS09330	0.62	-0.4
2,516,894	+		ABI39_RS09330	0.62	+0.1
2,516,925	+		ABI39_RS09330	0.63	+0.8
2,517,085	+		ABI39_RS09330	0.69	-1.4
2,517,106	+		ABI39_RS09330	0.69	-0.3
2,517,107	-		ABI39_RS09330	0.70	-2.5
2,517,219	-		ABI39_RS09330	0.73	+1.2
2,517,253	+		ABI39_RS09330	0.74	-0.2
2,517,288	-		ABI39_RS09330	0.76	-0.5
2,517,324	+		ABI39_RS09330	0.77	+0.6
2,517,389	-		ABI39_RS09330	0.79	-0.2
2,517,430	-		ABI39_RS09330	0.80	+0.3
2,517,515	+		ABI39_RS09330	0.83	+0.9
2,517,560	+		ABI39_RS09330	0.85	+0.5
2,517,665	-		ABI39_RS09330	0.88	-1.2
2,517,687	+		ABI39_RS09330	0.89	-0.0
2,517,688	-		ABI39_RS09330	0.89	-0.8
2,517,688	-		ABI39_RS09330	0.89	-1.8
2,517,817	+				+0.7
2,517,818	-				-2.7
2,517,831	-				+0.3
2,517,845	-				-0.8
2,517,928	+				+0.7
2,518,159	+				+0.8
2,518,215	+				-0.4
2,518,385	-				-0.9
2,518,456	+				+1.4
2,518,459	-				-1.8
2,518,464	+				-4.4
2,518,489	+				+1.8
2,518,491	+				+0.3
2,518,505	-				-3.8
2,518,530	+				-0.2
2,518,536	+				+2.0
2,518,616	-				+0.0
2,518,681	+				+1.4
2,518,696	+				+0.9
2,518,697	-				+1.4
2,518,699	-				-3.5
2,518,721	-				+1.2
2,518,764	+				-0.3
2,518,764	+				+0.2
2,518,778	+				-0.9
2,518,798	+				-0.9
2,518,800	+				+0.5
2,518,800	+				+0.5
2,518,800	+				+0.7
2,518,870	+				-0.5
2,518,871	-				-0.7
2,518,871	-				+2.4
2,518,874	+				+1.6
2,518,889	-				+0.5
2,518,923	-				+0.8
2,518,949	-				+1.0
2,518,949	-				+1.1
2,519,006	-				-3.2