Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS07840

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
2,122,004	+		ABI39_RS07835	0.54	-0.6
2,122,093	+		ABI39_RS07835	0.61	-0.9
2,122,093	+		ABI39_RS07835	0.61	+2.9
2,122,203	+		ABI39_RS07835	0.68	-1.7
2,122,204	-		ABI39_RS07835	0.68	-0.7
2,122,204	-		ABI39_RS07835	0.68	-1.3
2,122,356	-		ABI39_RS07835	0.79	-0.5
2,122,519	-				-3.9
2,122,633	+				-0.0
2,122,802	+				+0.8
2,122,847	-				+0.4
2,122,848	+				-3.0
2,122,852	+				-1.6
2,122,853	-				+0.1
2,122,853	-				+0.3
2,122,889	-				+0.7
2,122,897	+				-3.2
2,122,901	-				-0.2
2,122,919	+				+0.4
2,122,956	-				+1.5
2,122,974	+				+0.9
2,122,981	-				-3.7
2,122,983	+				+1.1
2,123,080	+		ABI39_RS07840	0.24	+1.1
2,123,227	+		ABI39_RS07840	0.53	-1.2
2,123,228	-		ABI39_RS07840	0.53	-4.4
2,123,231	+		ABI39_RS07840	0.54	+1.8
2,123,240	-		ABI39_RS07840	0.56	-1.5
2,123,274	+		ABI39_RS07840	0.62	-1.3
2,123,419	+				+0.7
2,123,478	+				-2.4
2,123,479	-				-0.2
2,123,484	-				+1.3
2,123,485	+				-1.2
2,123,525	+				-0.9
2,123,647	-		ABI39_RS07845	0.30	+0.8
2,123,704	+		ABI39_RS07845	0.51	-4.0
2,123,706	+		ABI39_RS07845	0.52	-0.1
2,123,779	-		ABI39_RS07845	0.80	+0.1
2,123,815	+				+1.0
2,123,907	-				-0.9
2,123,909	-				+0.0
2,123,928	-				+0.9
2,124,197	+				+0.7
2,124,260	-				+0.4
2,124,260	-				+0.4
2,124,278	-				+1.7
2,124,381	-		ABI39_RS07850	0.12	-0.6
2,124,392	+		ABI39_RS07850	0.13	-0.0
2,124,393	-		ABI39_RS07850	0.13	-2.8
2,124,436	+		ABI39_RS07850	0.16	-0.8