Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS07300

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
2,002,438	+		ABI39_RS23010	0.11	-5.1
2,002,572	-		ABI39_RS23010	0.25	-1.5
2,002,639	-		ABI39_RS23010	0.32	-1.4
2,002,709	+		ABI39_RS23010	0.40	-0.5
2,002,710	-		ABI39_RS23010	0.40	+0.6
2,002,710	-		ABI39_RS23010	0.40	+0.2
2,002,886	-		ABI39_RS23010	0.58	+0.8
2,002,960	+		ABI39_RS23010	0.66	+0.1
2,003,085	-		ABI39_RS23010	0.80	+0.4
2,003,119	+		ABI39_RS23010	0.83	-3.6
2,003,120	-		ABI39_RS23010	0.83	+0.9
2,003,277	-				-0.4
2,003,283	-				-1.9
2,003,416	-				-1.4
2,003,463	-		ABI39_RS07300	0.13	+1.6
2,003,540	-		ABI39_RS07300	0.19	-3.2
2,003,561	+		ABI39_RS07300	0.21	-0.0
2,003,600	+		ABI39_RS07300	0.24	+0.7
2,003,654	-		ABI39_RS07300	0.28	-0.4
2,003,654	-		ABI39_RS07300	0.28	+0.7
2,003,654	-		ABI39_RS07300	0.28	-1.1
2,003,719	+		ABI39_RS07300	0.33	+0.6
2,003,759	-		ABI39_RS07300	0.36	-0.1
2,003,773	+		ABI39_RS07300	0.37	+1.7
2,003,774	-		ABI39_RS07300	0.37	+0.3
2,003,779	+		ABI39_RS07300	0.37	+1.5
2,003,779	+		ABI39_RS07300	0.37	-0.2
2,003,781	+		ABI39_RS07300	0.37	+1.5
2,003,781	+		ABI39_RS07300	0.37	-0.7
2,003,782	-		ABI39_RS07300	0.37	-3.8
2,003,857	-		ABI39_RS07300	0.43	+0.9
2,003,857	-		ABI39_RS07300	0.43	+0.8
2,003,862	-		ABI39_RS07300	0.43	+2.9
2,003,874	+		ABI39_RS07300	0.44	-0.1
2,003,877	+		ABI39_RS07300	0.44	-4.8
2,004,029	+		ABI39_RS07300	0.56	-1.9
2,004,030	-		ABI39_RS07300	0.56	-0.4
2,004,157	+		ABI39_RS07300	0.65	+0.4
2,004,161	+		ABI39_RS07300	0.66	+0.2
2,004,161	+		ABI39_RS07300	0.66	-0.3
2,004,163	+		ABI39_RS07300	0.66	-0.5
2,004,214	+		ABI39_RS07300	0.70	-4.0
2,004,353	-		ABI39_RS07300	0.80	-1.1
2,004,374	+		ABI39_RS07300	0.81	+0.0
2,004,375	-		ABI39_RS07300	0.82	+0.4
2,004,418	+		ABI39_RS07300	0.85	-0.2
2,004,419	-		ABI39_RS07300	0.85	-1.0
2,004,419	-		ABI39_RS07300	0.85	+0.0
2,004,622	-				-0.0
2,004,642	-				+0.4
2,004,656	-				+0.1
2,004,906	+				-0.1
2,004,907	-				+0.4
2,005,011	-		ABI39_RS07305	0.16	-3.9
2,005,025	+		ABI39_RS07305	0.17	-1.4
2,005,030	-		ABI39_RS07305	0.17	+1.9
2,005,033	+		ABI39_RS07305	0.17	+2.6
2,005,033	+		ABI39_RS07305	0.17	+0.2
2,005,037	+		ABI39_RS07305	0.17	+1.0
2,005,037	+		ABI39_RS07305	0.17	+0.7
2,005,038	-		ABI39_RS07305	0.17	-4.5
2,005,147	-		ABI39_RS07305	0.24	-0.2
2,005,166	-		ABI39_RS07305	0.25	+0.9
2,005,167	+		ABI39_RS07305	0.25	-0.5
2,005,181	+		ABI39_RS07305	0.26	+0.6
2,005,259	+		ABI39_RS07305	0.31	+0.7
2,005,270	+		ABI39_RS07305	0.32	+0.5
2,005,317	+		ABI39_RS07305	0.35	-0.8
2,005,317	+		ABI39_RS07305	0.35	+0.5
2,005,402	+		ABI39_RS07305	0.40	-1.1
2,005,403	-		ABI39_RS07305	0.40	+0.2
2,005,429	-		ABI39_RS07305	0.42	-0.9
2,005,529	+		ABI39_RS07305	0.48	-2.8