Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS07230

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
1,987,748	-		ABI39_RS07215	0.52	+1.1
1,987,823	-		ABI39_RS07215	0.81	-0.6
1,987,863	+				+1.0
1,987,864	-				+0.7
1,987,864	-				-1.1
1,987,879	-				-0.4
1,987,928	-				-1.8
1,987,981	-				+0.2
1,988,001	+		ABI39_RS07220	0.15	+0.3
1,988,023	-		ABI39_RS07220	0.23	+0.2
1,988,024	+		ABI39_RS07220	0.23	-0.5
1,988,040	-		ABI39_RS07220	0.29	+0.9
1,988,044	-		ABI39_RS07220	0.30	+0.3
1,988,068	-		ABI39_RS07220	0.38	-0.3
1,988,130	-		ABI39_RS07220	0.60	-1.5
1,988,146	+		ABI39_RS07220	0.65	+0.2
1,988,214	+		ABI39_RS07220	0.89	+1.2
1,988,215	-		ABI39_RS07220	0.89	+0.7
1,988,226	+				-0.2
1,988,235	+				-0.1
1,988,372	-		ABI39_RS07225	0.26	-4.9
1,988,374	+		ABI39_RS07225	0.27	+0.4
1,988,430	-		ABI39_RS07225	0.40	+0.8
1,988,459	-		ABI39_RS07225	0.47	-3.0
1,988,467	+		ABI39_RS07225	0.49	-0.6
1,988,743	+		ABI39_RS07230	0.10	-2.0
1,988,743	+		ABI39_RS07230	0.10	-0.7
1,988,744	-		ABI39_RS07230	0.11	-2.9
1,988,744	-		ABI39_RS07230	0.11	+0.2
1,988,800	-		ABI39_RS07230	0.24	+0.8
1,988,840	+		ABI39_RS07230	0.34	-3.6
1,988,858	+		ABI39_RS07230	0.38	-0.3
1,988,940	+		ABI39_RS07230	0.58	+0.2
1,989,055	-		ABI39_RS07230	0.86	-1.6
1,989,093	+				+1.1
1,989,122	+				-1.3
1,989,145	+				+0.4
1,989,354	+		ABI39_RS07235	0.49	+0.3
1,989,355	-		ABI39_RS07235	0.49	-0.9
1,989,356	+		ABI39_RS07235	0.49	-3.0
1,989,357	-		ABI39_RS07235	0.49	-1.9
1,989,419	-		ABI39_RS07235	0.64	-0.7
1,989,420	+		ABI39_RS07235	0.64	-0.2
1,989,512	+		ABI39_RS07235	0.85	-3.9
1,989,513	-		ABI39_RS07235	0.85	-0.0
1,989,543	-				+1.2
1,989,576	-				-3.0
1,989,791	+		ABI39_RS07240	0.21	+0.4
1,989,831	+		ABI39_RS07240	0.29	+1.2
1,989,957	+		ABI39_RS07240	0.52	-0.4
1,989,963	-		ABI39_RS07240	0.53	-0.4
1,989,971	+		ABI39_RS07240	0.55	-4.7
1,990,017	+		ABI39_RS07240	0.63	+0.1
1,990,022	+		ABI39_RS07240	0.64	+0.5
1,990,040	+		ABI39_RS07240	0.67	+0.5
1,990,041	-		ABI39_RS07240	0.67	-3.2
1,990,044	+		ABI39_RS07240	0.68	+1.0
1,990,045	-		ABI39_RS07240	0.68	-3.5
1,990,046	+		ABI39_RS07240	0.68	+0.5
1,990,047	-		ABI39_RS07240	0.69	-0.1
1,990,048	+		ABI39_RS07240	0.69	-3.2
1,990,048	+		ABI39_RS07240	0.69	-1.2
1,990,049	-		ABI39_RS07240	0.69	+1.3
1,990,052	+		ABI39_RS07240	0.69	+0.6
1,990,053	-		ABI39_RS07240	0.70	+0.7
1,990,053	-		ABI39_RS07240	0.70	+2.7
1,990,053	-		ABI39_RS07240	0.70	+0.7