Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06595

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
1,830,497	+		ABI39_RS06590	0.53	-0.1
1,830,519	-		ABI39_RS06590	0.55	-0.4
1,830,529	+		ABI39_RS06590	0.55	-1.8
1,830,553	+		ABI39_RS06590	0.57	-0.7
1,830,557	+		ABI39_RS06590	0.57	-4.2
1,830,557	+		ABI39_RS06590	0.57	-3.0
1,830,565	-		ABI39_RS06590	0.58	+1.6
1,830,565	-		ABI39_RS06590	0.58	+0.9
1,830,650	-		ABI39_RS06590	0.63	+0.0
1,830,937	+		ABI39_RS06590	0.82	-3.4
1,831,230	+				-0.7
1,831,230	+				-2.1
1,831,231	-				-1.3
1,831,340	+				+0.5
1,831,366	+				+1.0
1,831,390	-				-4.7
1,831,390	-				-1.6
1,831,415	-				-0.5
1,831,598	+		ABI39_RS06595	0.18	+1.8
1,831,599	-		ABI39_RS06595	0.18	+1.1
1,831,913	+		ABI39_RS06595	0.34	+2.5
1,831,915	+		ABI39_RS06595	0.34	+0.7
1,831,956	+		ABI39_RS06595	0.36	-0.0
1,831,957	-		ABI39_RS06595	0.36	+1.4
1,831,961	+		ABI39_RS06595	0.36	+0.3
1,831,961	+		ABI39_RS06595	0.36	-1.7
1,832,053	-		ABI39_RS06595	0.41	-0.2
1,832,174	+		ABI39_RS06595	0.47	+1.1
1,832,235	-		ABI39_RS06595	0.50	+3.5
1,832,329	-		ABI39_RS06595	0.55	+2.0
1,832,814	+		ABI39_RS06595	0.79	+1.3
1,832,822	-		ABI39_RS06595	0.80	+3.0
1,832,845	-		ABI39_RS06595	0.81	-0.1
1,832,956	+		ABI39_RS06595	0.87	-0.6
1,832,977	-		ABI39_RS06595	0.88	+0.3
1,833,048	+				+0.6
1,833,148	-				-0.5
1,833,266	+				-1.5
1,833,289	-				+0.5
1,833,372	+				+0.1
1,833,372	+				+0.3
1,833,381	+				+0.6
1,833,438	-				-1.4
1,833,510	+				+0.9
1,833,525	-				-1.0
1,833,564	+				-3.6
1,833,640	+				+0.9
1,833,713	+				+0.1
1,833,756	+				+0.2
1,833,832	+				-0.9
1,833,892	-				-2.6
1,833,895	+				+0.2
1,833,895	+				-1.7
1,833,980	+				-4.3
1,834,025	-				+0.7
1,834,217	-		ABI39_RS06600	0.12	+1.0
1,834,217	-		ABI39_RS06600	0.12	-0.7