Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06345

Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
1,758,311	+		ABI39_RS06340	0.62	+1.4
1,758,312	-		ABI39_RS06340	0.62	+1.1
1,758,362	+		ABI39_RS06340	0.64	+0.9
1,758,377	+		ABI39_RS06340	0.65	+0.4
1,758,390	+		ABI39_RS06340	0.66	+0.8
1,758,542	+		ABI39_RS06340	0.73	+0.3
1,758,543	-		ABI39_RS06340	0.73	+0.0
1,758,590	+		ABI39_RS06340	0.75	+0.7
1,758,592	-		ABI39_RS06340	0.76	+2.2
1,758,594	-		ABI39_RS06340	0.76	+0.8
1,758,696	-		ABI39_RS06340	0.81	-3.8
1,758,712	+		ABI39_RS06340	0.81	-1.7
1,758,925	-				-0.5
1,759,017	+				+1.4
1,759,048	+				-0.6
1,759,080	-				-0.4
1,759,364	-		ABI39_RS06345	0.19	-0.9
1,759,537	-		ABI39_RS06345	0.31	+1.0
1,759,679	+		ABI39_RS06345	0.41	-3.0
1,759,683	-		ABI39_RS06345	0.42	-2.3
1,759,689	-		ABI39_RS06345	0.42	-1.1
1,759,759	-		ABI39_RS06345	0.47	+1.4
1,759,809	-		ABI39_RS06345	0.51	+0.3
1,759,809	-		ABI39_RS06345	0.51	+1.0
1,759,916	+		ABI39_RS06345	0.58	+1.3
1,759,917	-		ABI39_RS06345	0.59	+1.8
1,759,972	-		ABI39_RS06345	0.62	+0.2
1,760,061	+		ABI39_RS06345	0.69	+0.1
1,760,061	+		ABI39_RS06345	0.69	-0.2
1,760,062	-		ABI39_RS06345	0.69	+0.3
1,760,062	-		ABI39_RS06345	0.69	-0.7
1,760,087	-		ABI39_RS06345	0.71	-0.7
1,760,166	-		ABI39_RS06345	0.76	-0.0
1,760,312	-		ABI39_RS06345	0.87	-1.8
1,760,476	+				+1.6
1,760,479	-				+1.0
1,760,480	+				+0.5
1,760,480	+				+1.5
1,760,480	+				+0.3
1,760,483	+				+1.3
1,760,484	-				+0.4
1,760,498	+				+0.8
1,760,585	-				+0.4
1,760,585	-				-3.8
1,760,589	-				+2.6
1,760,628	-				+0.3
1,760,639	-		ABI39_RS06350	0.10	+1.7
1,760,668	+		ABI39_RS06350	0.12	-0.6
1,760,669	-		ABI39_RS06350	0.12	+0.2
1,760,674	+		ABI39_RS06350	0.12	-1.1
1,760,730	+		ABI39_RS06350	0.16	-0.3
1,760,731	-		ABI39_RS06350	0.16	-4.1
1,760,871	-		ABI39_RS06350	0.26	+0.3
1,760,900	+		ABI39_RS06350	0.28	-4.4
1,761,177	-		ABI39_RS06350	0.47	-0.2
1,761,185	+		ABI39_RS06350	0.48	+0.8
1,761,214	-		ABI39_RS06350	0.50	-2.8
1,761,287	-		ABI39_RS06350	0.55	-1.5
1,761,290	+		ABI39_RS06350	0.55	-1.9
1,761,290	+		ABI39_RS06350	0.55	-2.6
1,761,357	+		ABI39_RS06350	0.60	+0.6
1,761,358	-		ABI39_RS06350	0.60	-1.2
1,761,402	-		ABI39_RS06350	0.63	-0.4
1,761,436	-		ABI39_RS06350	0.65	+0.3