Experiment: Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03040 and ABI39_RS03045 are separated by 25 nucleotides ABI39_RS03045 and ABI39_RS03050 are separated by 115 nucleotides ABI39_RS03050 and ABI39_RS03055 are separated by 704 nucleotides
ABI39_RS03040: ABI39_RS03040 - lytic transglycosylase domain-containing protein, at 887,466 to 888,464
_RS03040
ABI39_RS03045: ABI39_RS03045 - ion transporter, at 888,490 to 889,347
_RS03045
ABI39_RS03050: ABI39_RS03050 - DUF4981 domain-containing protein, at 889,463 to 892,558
_RS03050
ABI39_RS03055: ABI39_RS03055 - hypothetical protein, at 893,263 to 893,889
_RS03055
Position (kb) 889
890
891
892
893 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 888.519 kb on + strand at 888.604 kb on - strand, within ABI39_RS03045 at 888.699 kb on + strand, within ABI39_RS03045 at 888.751 kb on - strand, within ABI39_RS03045 at 888.800 kb on + strand, within ABI39_RS03045 at 888.835 kb on + strand, within ABI39_RS03045 at 889.005 kb on - strand, within ABI39_RS03045 at 889.013 kb on - strand, within ABI39_RS03045 at 889.034 kb on - strand, within ABI39_RS03045 at 889.125 kb on - strand, within ABI39_RS03045 at 889.209 kb on + strand, within ABI39_RS03045 at 889.277 kb on - strand at 889.329 kb on + strand at 889.330 kb on - strand at 889.330 kb on - strand at 889.382 kb on + strand at 889.456 kb on + strand at 889.457 kb on - strand at 889.507 kb on + strand at 889.795 kb on + strand, within ABI39_RS03050 at 889.809 kb on + strand, within ABI39_RS03050 at 889.814 kb on + strand, within ABI39_RS03050 at 889.928 kb on - strand, within ABI39_RS03050 at 889.964 kb on + strand, within ABI39_RS03050 at 889.965 kb on - strand, within ABI39_RS03050 at 889.986 kb on - strand, within ABI39_RS03050 at 890.153 kb on + strand, within ABI39_RS03050 at 890.153 kb on + strand, within ABI39_RS03050 at 890.353 kb on - strand, within ABI39_RS03050 at 890.391 kb on + strand, within ABI39_RS03050 at 890.396 kb on - strand, within ABI39_RS03050 at 890.485 kb on - strand, within ABI39_RS03050 at 890.553 kb on + strand, within ABI39_RS03050 at 890.553 kb on + strand, within ABI39_RS03050 at 890.553 kb on + strand, within ABI39_RS03050 at 890.569 kb on + strand, within ABI39_RS03050 at 890.570 kb on - strand, within ABI39_RS03050 at 890.575 kb on - strand, within ABI39_RS03050 at 890.617 kb on - strand, within ABI39_RS03050 at 890.679 kb on - strand, within ABI39_RS03050 at 890.754 kb on - strand, within ABI39_RS03050 at 890.990 kb on + strand, within ABI39_RS03050 at 891.035 kb on + strand, within ABI39_RS03050 at 891.179 kb on + strand, within ABI39_RS03050 at 891.180 kb on - strand, within ABI39_RS03050 at 891.279 kb on - strand, within ABI39_RS03050 at 891.290 kb on + strand, within ABI39_RS03050 at 891.291 kb on - strand, within ABI39_RS03050 at 891.386 kb on + strand, within ABI39_RS03050 at 891.387 kb on - strand, within ABI39_RS03050 at 891.478 kb on + strand, within ABI39_RS03050 at 891.533 kb on + strand, within ABI39_RS03050 at 891.534 kb on - strand, within ABI39_RS03050 at 891.761 kb on + strand, within ABI39_RS03050 at 891.867 kb on - strand, within ABI39_RS03050 at 891.981 kb on - strand, within ABI39_RS03050 at 891.990 kb on - strand, within ABI39_RS03050 at 892.096 kb on + strand, within ABI39_RS03050 at 892.096 kb on + strand, within ABI39_RS03050 at 892.118 kb on + strand, within ABI39_RS03050 at 892.209 kb on - strand, within ABI39_RS03050 at 892.214 kb on + strand, within ABI39_RS03050 at 892.215 kb on - strand, within ABI39_RS03050 at 892.215 kb on - strand, within ABI39_RS03050 at 892.215 kb on - strand, within ABI39_RS03050 at 892.299 kb on + strand at 892.336 kb on + strand at 892.485 kb on - strand at 892.486 kb on + strand at 892.486 kb on + strand at 892.487 kb on - strand at 892.487 kb on - strand at 892.513 kb on + strand at 892.614 kb on - strand at 892.618 kb on + strand at 892.636 kb on + strand at 892.636 kb on + strand at 892.674 kb on - strand at 892.986 kb on + strand at 892.996 kb on + strand at 892.997 kb on - strand at 893.022 kb on + strand at 893.157 kb on + strand at 893.358 kb on - strand, within ABI39_RS03055
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) remove 888,519 + +0.8 888,604 - ABI39_RS03045 0.13 +0.5 888,699 + ABI39_RS03045 0.24 -2.8 888,751 - ABI39_RS03045 0.30 +0.0 888,800 + ABI39_RS03045 0.36 +0.7 888,835 + ABI39_RS03045 0.40 -1.6 889,005 - ABI39_RS03045 0.60 +1.5 889,013 - ABI39_RS03045 0.61 +0.7 889,034 - ABI39_RS03045 0.63 -0.5 889,125 - ABI39_RS03045 0.74 +0.5 889,209 + ABI39_RS03045 0.84 -4.7 889,277 - -1.1 889,329 + +0.5 889,330 - -0.4 889,330 - +1.5 889,382 + -1.9 889,456 + -1.1 889,457 - -1.0 889,507 + +0.4 889,795 + ABI39_RS03050 0.11 +0.6 889,809 + ABI39_RS03050 0.11 +0.5 889,814 + ABI39_RS03050 0.11 +0.6 889,928 - ABI39_RS03050 0.15 +0.1 889,964 + ABI39_RS03050 0.16 -0.5 889,965 - ABI39_RS03050 0.16 +2.2 889,986 - ABI39_RS03050 0.17 -0.4 890,153 + ABI39_RS03050 0.22 -2.8 890,153 + ABI39_RS03050 0.22 +1.3 890,353 - ABI39_RS03050 0.29 +0.8 890,391 + ABI39_RS03050 0.30 +0.0 890,396 - ABI39_RS03050 0.30 +0.5 890,485 - ABI39_RS03050 0.33 -0.6 890,553 + ABI39_RS03050 0.35 -0.6 890,553 + ABI39_RS03050 0.35 +0.1 890,553 + ABI39_RS03050 0.35 +0.7 890,569 + ABI39_RS03050 0.36 -1.4 890,570 - ABI39_RS03050 0.36 -1.4 890,575 - ABI39_RS03050 0.36 -2.2 890,617 - ABI39_RS03050 0.37 -3.1 890,679 - ABI39_RS03050 0.39 -0.0 890,754 - ABI39_RS03050 0.42 -1.1 890,990 + ABI39_RS03050 0.49 +0.2 891,035 + ABI39_RS03050 0.51 +0.7 891,179 + ABI39_RS03050 0.55 +0.1 891,180 - ABI39_RS03050 0.55 -0.0 891,279 - ABI39_RS03050 0.59 +0.1 891,290 + ABI39_RS03050 0.59 -0.1 891,291 - ABI39_RS03050 0.59 -4.4 891,386 + ABI39_RS03050 0.62 -0.6 891,387 - ABI39_RS03050 0.62 +0.1 891,478 + ABI39_RS03050 0.65 -3.9 891,533 + ABI39_RS03050 0.67 +1.1 891,534 - ABI39_RS03050 0.67 +1.4 891,761 + ABI39_RS03050 0.74 -0.3 891,867 - ABI39_RS03050 0.78 +0.5 891,981 - ABI39_RS03050 0.81 +0.6 891,990 - ABI39_RS03050 0.82 -2.3 892,096 + ABI39_RS03050 0.85 -5.2 892,096 + ABI39_RS03050 0.85 -1.4 892,118 + ABI39_RS03050 0.86 +1.0 892,209 - ABI39_RS03050 0.89 -1.5 892,214 + ABI39_RS03050 0.89 -0.1 892,215 - ABI39_RS03050 0.89 +0.0 892,215 - ABI39_RS03050 0.89 -0.0 892,215 - ABI39_RS03050 0.89 -3.6 892,299 + -3.6 892,336 + +0.4 892,485 - -0.5 892,486 + -1.1 892,486 + +0.8 892,487 - -3.8 892,487 - +1.3 892,513 + +0.3 892,614 - +0.8 892,618 + +0.7 892,636 + +0.8 892,636 + +1.0 892,674 - +1.8 892,986 + -1.1 892,996 + +0.5 892,997 - -3.8 893,022 + -4.0 893,157 + +0.6 893,358 - ABI39_RS03055 0.15 -2.1
Or see this region's nucleotide sequence